Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3196 ATGAACATGGAAAACTCTCGTAGATCTTTAGATAGATCGAGAGAACCAGGTGCAAAGAAACCTCGATTGATCGATGAGCTACAACAAGGTTCCAATCAAACTTCACGAACGTTTCCTCAACGACAACAACCTACCTCTGGGGTTGCTACGATGTTGTCGTCTGGTAGGTTTCGAATGAACGATAGAGACTCTGAAAGTAGTGATGGTGGCGGTGGTTACCACCCGCAACCACCGCCGCATCAAGAGCTGGTGACTCAGTATAAGGCTGCTCTTGCCGAGCTTACTTTTAACTCGAAACCGATAATTACTAATTTGACTATAATTGCTGGAGAGAATCTTTCTGCGGCGAAATCGATTGCTGGTGCTGTTTGTGGTAACATTCTTGAGGTTCCAAGTGACCAAAAGCTGCCATCGCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGTGATTACATAAAATACTTCGCTGTCAGACTACCCGAGGTATTCTGCAATACATACAGACAGGTTGATACTCCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTCTTTCCTCCTCAGACTCTTCAGATAATTGAGAAGGAACTCAACTTCAATCCCGCGGTCAATGGTTCAGCTTCTGCATCTGCTACCCTTAGAAGTGATTCTCAGTCTCAACGCCCATCTCATAGCATCCATGTGAATCCCAAATATTTAGAAAGGCAACGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTATTTGATGATATGGCTGGAGTTATTTCAAATGCAAATGAAGGCGCAGAGAGGCCAGATCGAGCTTTGGGTGCTGCACGTCCATGGCTGGATCCTAGGCTTAACATGCATAATAATCAGCATACTCATAGAGGTGCACTTAATGACTCTGTTCCTGAAAAGAGCATCGGCGGAGCCTATGGAGATGATGAGTATAATTCTAGTGTTTCAAATAGTTTGGGTTCAGGTGTTGGAAGAACCGGAAGTAGGCTCATTGGTGGTGTTGCAGAGACCTTATCCGGGCAAAGAAATGGTTTCAGCCTCAAACATAGTTTTTCAAATCATGAAGCACCGAAGTCTGTGAATTTGGATGCACATAACATAAGGAGCAGTGCAATGTCAAAGAACTGGAAAAATTCGGAGGAAGAGGAGTTCATGTGGGATGAGGTGAACCCTGGTTTGTCTGATAATGTACCTAATGTCTCTAACAACTTGAGCTCAGACCAATGGATGGCCGATGATGACAATTTGGAAAGTGAAGATCACCTCCAATTCACACACCCAATTGGAACAAAGGTTAATAAAGGAATATCCACTGTTAAGAAACAACTACCATCATCTGGGGGGCATTCATCATTATCATGGGAGTTGCAGAAGCAGGTCCCAAGTGCCAAATTGAATATGAAGCCAGGTCACTCAGAAATATTTGTTTCTGCTCCTAGTGGCTTACCCAAGAATCCAAATTCTTCGGCTGCGAGGATAAGAAATCAGTCTTCTATGCCGCATACAACAATAGGAATGTCCAAAATTACAGGACAGCAGCAATTTGATTCTGAGGGGACTGAGTCCCCTTCGGAACAGTCTTCACCTTTGCGACAACAGTCTCCAAAAGTGCCAGTAACAATACGAAACCCTCCTTCAATGCGAAATTTGGCTGAGCAAGATTGTCCAACAACTCTTAAAACATCTCAACATTTGGGTGGTCTGCAAAGTCAATATATTAGAGATCCCGTGCCTGCCATTCGTTCCAATGTTCAGGTTGGTAACTTGCGAAAATCACAAGAGAAGGACATGCGGGGTCCGTTATCTTCAGCAACTTCTTTTCAGCCAAAACCTCAGCAACAGCAGCTGGGTTCTTCACAGGCTGAAGTTACTCTTAAAGCTAAGCAGCCACTCAAATCTAAAGCTCCTTTAGTCAAAGCCAAAGTAACTTCAGAAAAGTCAACCACAAAGTGTCTTCCAGCTCCATCTGTGAAGAGTGGAATCATTCCCAATAAATCAATTACCAGAAATCTGGATGCAAGCAATCGTCCATCTCAAATAGGGGTTAAGCCTACTAGGTCAGGTGGTCCTTCCCCGGCCACATTAATTTCTTCGGGGTCTCCCGCCATGTCACTAGGTTCTCCAGATGATTATTCACCTACTCTGCCAAAACTACCGCAAGGGAAGGCTGGAAAGAAGCAAAATGATTCTACTCAACCATCTACTTCCTCCAACAATCGCGGTGCATCAGCTCCGAGCTCAAATACCGCCAATAAGAATACCTTGAATCCAATTTCAAATCTTTTAAGCTCATTAGTTGCGAAAGGTTTGATATCCGCAGGAACAGAGTCAGCAACTACAGTACGAAGTGAGACGGTGATGCGATCGAAAGACCAAACTGAAAGCATTGCTGTCAGTTCCTCTTTACCAGTTGCTTCAGTTCCTGTTTCTTCAGCTGTCCCAGTAAAATCTTCCAGAATTGAGGCAGATGATGCTGCAAAGGCCTCGCTTGCCTTGTCTCAATCAACTAGCACAGAAATTAGAAATCTCATTGGCTTTGATTTCAAACCTGATGTAATTCGAGAAATGCACCCACATGTAATCGAAGAATTATTGGATGAACTTCCACATCATTGCGGTGATTGTGGTATTAGGCTTAAACAACAAGAACAGTTTAATAGACACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAATGGTCTGACTGTAGCATCAAGAAGATGGTATGTAACGTCAGATGACTGGATTGCTAGCAAGGCAGAATGTCTGTCCGAGTCTGAGTTTACTGATTCTGTAGATGAATATGATGATAATAAAACAGACGGGAGTCAATTGGACACTATGGTTGTAGCAGATGAAAACCAATGCTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTATACTGTCAGGAAAGGGACGAGTGGATGTTCAAGGGGGCTGTATACCTGAACAATCCAGATAGCGATAGCGAGATGGAAAGTAGAAATGTGGGGCCCATCATTCATGCTAGATGCTTGTCAGATAACTCAATACTTGGTGTGACTAATACAGAACATGATTGA 3087 0.4334 MNMENSRRSLDRSREPGAKKPRLIDELQQGSNQTSRTFPQRQQPTSGVATMLSSGRFRMNDRDSESSDGGGGYHPQPPPHQELVTQYKAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCGNILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCNTYRQVDTPVHSSMRHLFGTWRGVFPPQTLQIIEKELNFNPAVNGSASASATLRSDSQSQRPSHSIHVNPKYLERQRLQQSSRTKGVFDDMAGVISNANEGAERPDRALGAARPWLDPRLNMHNNQHTHRGALNDSVPEKSIGGAYGDDEYNSSVSNSLGSGVGRTGSRLIGGVAETLSGQRNGFSLKHSFSNHEAPKSVNLDAHNIRSSAMSKNWKNSEEEEFMWDEVNPGLSDNVPNVSNNLSSDQWMADDDNLESEDHLQFTHPIGTKVNKGISTVKKQLPSSGGHSSLSWELQKQVPSAKLNMKPGHSEIFVSAPSGLPKNPNSSAARIRNQSSMPHTTIGMSKITGQQQFDSEGTESPSEQSSPLRQQSPKVPVTIRNPPSMRNLAEQDCPTTLKTSQHLGGLQSQYIRDPVPAIRSNVQVGNLRKSQEKDMRGPLSSATSFQPKPQQQQLGSSQAEVTLKAKQPLKSKAPLVKAKVTSEKSTTKCLPAPSVKSGIIPNKSITRNLDASNRPSQIGVKPTRSGGPSPATLISSGSPAMSLGSPDDYSPTLPKLPQGKAGKKQNDSTQPSTSSNNRGASAPSSNTANKNTLNPISNLLSSLVAKGLISAGTESATTVRSETVMRSKDQTESIAVSSSLPVASVPVSSAVPVKSSRIEADDAAKASLALSQSTSTEIRNLIGFDFKPDVIREMHPHVIEELLDELPHHCGDCGIRLKQQEQFNRHLEWHATKEREQNGLTVASRRWYVTSDDWIASKAECLSESEFTDSVDEYDDNKTDGSQLDTMVVADENQCLCVLCGELFEDVYCQERDEWMFKGAVYLNNPDSDSEMESRNVGPIIHARCLSDNSILGVTNTEHD* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3196 1028 MobiDBLite consensus disorder prediction 26 53 - -
Mtr7g3196 1028 CDD CID_Pcf11 84 204 - -
Mtr7g3196 1028 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1025 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Mtr7g3196 1028 MobiDBLite consensus disorder prediction 638 761 - -
Mtr7g3196 1028 MobiDBLite consensus disorder prediction 604 625 - -
Mtr7g3196 1028 MobiDBLite consensus disorder prediction 1 80 - -
Mtr7g3196 1028 ProSitePatterns Zinc finger C2H2 type domain signature. 878 898 IPR013087 -
Mtr7g3196 1028 MobiDBLite consensus disorder prediction 518 554 - -
Mtr7g3196 1028 SUPERFAMILY ENTH/VHS domain 79 203 IPR008942 -
Mtr7g3196 1028 MobiDBLite consensus disorder prediction 214 232 - -
Mtr7g3196 1028 Gene3D - 76 204 IPR008942 -
Mtr7g3196 1028 ProSiteProfiles CID domain profile. 79 207 IPR006569 -
Mtr7g3196 1028 MobiDBLite consensus disorder prediction 290 317 - -
Mtr7g3196 1028 MobiDBLite consensus disorder prediction 591 625 - -
Mtr7g3196 1028 MobiDBLite consensus disorder prediction 667 713 - -
Mtr7g3196 1028 Pfam CID domain 88 197 IPR006569 -
Mtr7g3196 1028 MobiDBLite consensus disorder prediction 1 22 - -
Mtr7g3196 1028 MobiDBLite consensus disorder prediction 214 251 - -
Mtr7g3196 1028 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1025 - -
Mtr7g3196 1028 SMART 558neu5 82 204 IPR006569 -
Mtr7g3196 1028 MobiDBLite consensus disorder prediction 730 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3196 Mtr-Chr7 48937203 48944200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3196 21 399 C2H2 Transcription Factor Family AT4G04885 36.842 9.27e-58 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr7g3196 CID 1.5e-11 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3196 K14400 - gmx:100788958 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3196 7 48937203 48944200 Mtr7g3196 7 48937203 48944200 ECH
Mtr7g3196 7 48937203 48944200 Mtr1g2071 1 30622098 30629121 PCT