Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3176 ATGGATTGGAATGAGAGCACAAGACCCTTTGTTCCTCATACTGAGTCTTCCTTAAGCTTCTTCTACAACTATAACAACACCCCTTATTCAGGAATGGAAATGAGTCAACCGTCATTGGGTGAGACACAACAAAGGTTACTTCCAGCTATGGATGAAATGAACATTGATGGAAATAATTATAGAGAGAAGAAGAAGAGATTAACAAGTAACCAGATTGATTCACTGGAGAAGAGTTTCCAAGAAGAAATAAAGCTAGACCCTGAAAGGAAGATGAAGCTTTCAAGAGAGCTAGGGCTCCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTACAAGGTGGAAGGCTAAGCAGCTTGAACACTTGTATGATGTTTTGAAACAAGAATTTGATGTTGTCTCCAAGGAAAAACAGAAACTTCAAGAAGAGGTTATGAAGTTGAAGGGAAAGTTAAAAGAGCAATCAGGTGGTAATTTTAGGACACAAACATATGTTGAAGAAACAGTAGAAAGCACATCAGAAGGTCTACGTTGTTCTAACAAACCAACAAGTAGTAGCATTCAACAAGCTGTTCCAGATCAGGGATACAATAACAACAACAACAGTACTACTTTCATTGTTGAAGATTTTAATAACTCAGTTTCAATGCCTCCTAATCAATGTCACTGGCCTGTATTACCTAATTATTATCCCTAA 699 0.3791 MDWNESTRPFVPHTESSLSFFYNYNNTPYSGMEMSQPSLGETQQRLLPAMDEMNIDGNNYREKKKRLTSNQIDSLEKSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDVLKQEFDVVSKEKQKLQEEVMKLKGKLKEQSGGNFRTQTYVEETVESTSEGLRCSNKPTSSSIQQAVPDQGYNNNNNSTTFIVEDFNNSVSMPPNQCHWPVLPNYYP* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3176 232 SUPERFAMILY Homeodomain-like 49 120 IPR009057 -
Mtr7g3176 232 Pfam Homeodomain 61 116 IPR001356 GO:0003677
Mtr7g3176 232 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Mtr7g3176 232 Coils Coil 117 158 - -
Mtr7g3176 232 Pfam Homeobox associated leucine zipper 118 152 IPR003106 GO:0006355|GO:0043565
Mtr7g3176 232 CDD homeodomain 61 119 IPR001356 GO:0003677
Mtr7g3176 232 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Mtr7g3176 232 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Mtr7g3176 232 Gene3D - 56 132 - -
Mtr7g3176 232 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 226 IPR045224 GO:0003700
Mtr7g3176 232 SMART HOX_1 61 122 IPR001356 GO:0003677
Mtr7g3176 232 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 226 - -
Mtr7g3176 232 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Mtr7g3176 232 MobiDBLite consensus disorder prediction 176 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3176 Mtr-Chr7 48740583 48743016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3176 16 148 Homeobox Transcription Factor Family AT5G03790 57.447 3.67e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr7g3176 Homeodomain 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3176 - - ccaj:109798071 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3176 7 48740583 48743016 Mtr7g3176 7 48740583 48743016 ECH
Mtr1g2091 1 30873854 30876358 Mtr7g3176 7 48740583 48743016 PCT