Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3161 ATGGCGGTTCCTCCCTCCGCCACTCCAGCTTCTCTTTACGTCGGCGATCTCCATCCCGACCTCTCCGACTCTCAGCTTCACGATGCTTTCTCCGATTTCAAAACTCTCGCTTCTGTTCGCATTTGCCGAGACTCTTCCTCTGGTAAATCACTCTGTTATGGTTACGTCAACTTCCTCTCCCCTCACGACGCAATTCGTGCCATTGAGGTGAAGAATCATTCTACATTGAATGGAAAAGCTATTAGGGTGATGTGGTCACGTCGTGATCCTGATGCAAGGAAAAGTTGTATAGGGAACGTGTTTGTTAAGAATTTAGCTGAATCAATAGATAATTCTGGATTAGAGGATATGTTTAAGAAGTTTGGGAATATTTTGTCAAGTAAAGTTGTAATGTCTGAGGATGGGAAGAGTAAAGGATATGGCTTTGTTCAATTTGAAACAGAGGAATCTGCAAATGCTGCTATTGAGAGGTTGAATGGATATCTTGTTGGTGATAAGCAAATATATGTTGGAAAGTTTGTCAAGAAAAGTGACCGCATATCGTCTGGCCCGGATACTAGATATACAAACTTGTACATGAAGAATTTGGACTTAGATATTTCAGAAACACTTCTGCGTGAAAAGTTTTCCTCTTTTGGGAAAATCATTAGCTTGGCTGTTGCAAAGGACAGCAATGGTATGTCAAAGGGTTTTGGCTTCGTGAACTTCGATAACCCAGAAGATGCTAAAAGGGCAATGGAAACAATGAATGGATTGCAACTAGGTTCAAAGATTCTGTATGTAGCCAGGGCACAGAAGAAGGCTGAGCGTGAGCAGATCTTGCACCAGCAATTTGAAGAGAAACGAAAGGAACAAGTCTTGAAATATAAGGGGTCAAACATTTATGTGAAGAATATTGATGACAATGTTAGTGATGAAGGACTGAGAGATCACTTTAGTGTATGTGGCACTATAACTTCTGCAAAGATTATGCGAGATGACAAAGGGATAAGCAAAGGATTTGGTTTTGTGTGCTTCTCCACTCCTGAGGAGGCTAATAAAGCTGTGAACTCTTTTCATGGATTCATGTTCCATGGTAAACCGCTATATGTTTCTCTTGCTCAGCGGAAAGAGGACAGACAGGCACAGTTGCAGCTCCAATATGCCCAGCAAATTGCAGGACTCGCTGGGCCTTCAACTGCCATTGTCCCTGGTGGATATCCTCCTTTCTACTACACAGCTACTGGTGTTGTTTCACACGCGCCTCCTCGTGCTGGGCTCGTGTATCAGCCTATGGCATTGAGGCCTGGATGGAGGGCTAATGGCTCTGCACCTCCTGCCAGATCATTCCAACAGTCACCTACGCCTGTTGTTTCTAACAATAATACTAGGCAGCATAGGCAAAATAGGGGTAGGATGAATGGCCATGCAGTATCACAGGGAAATACTCACTCTGGTACATATATGCCACAAGCCCAGCAGGCTTCTCAGTCAGCGATCTCTTCAAGAGAGTCAAGTACTCAGCAGAGAACTGGGCAAGCTAAGTATGTACCTAGTGGGCGCCACCGTGAGATGGAAAAAGGATCTGGATTATCATCTAGTGGAGGATCCTTGGGACCAGAAGTGCTGCATAGCATGCTTGCTAATGCTACTCCAGAGCAGCAGAAGGAGATACTTGGCGAACATCTATACATGCTTGTCCAGAAAATCAAGCCTAACCTAGCAGCAAAGATTACTGGGATGCTTTTGGAGATGGACAATGCTGAATTGCTGGTTCTCATTGAATCACCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTTTCCAAGTGCTGAAGAACTCTAAAGCTAAAGTTTCTGGTCAGGATGTACTTCATTCAAATTTCCTTTCAGCTGAGGTTGCTGTGAACTAA 1890 0.4407 MAVPPSATPASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVKNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRKEDRQAQLQLQYAQQIAGLAGPSTAIVPGGYPPFYYTATGVVSHAPPRAGLVYQPMALRPGWRANGSAPPARSFQQSPTPVVSNNNTRQHRQNRGRMNGHAVSQGNTHSGTYMPQAQQASQSAISSRESSTQQRTGQAKYVPSGRHREMEKGSGLSSSGGSLGPEVLHSMLANATPEQQKEILGEHLYMLVQKIKPNLAAKITGMLLEMDNAELLVLIESPESLSAKVEEAFQVLKNSKAKVSGQDVLHSNFLSAEVAVN* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3161 629 SMART poly_2 544 607 IPR002004 GO:0003723
Mtr7g3161 629 PANTHER RNA BINDING PROTEIN 5 505 - -
Mtr7g3161 629 PANTHER RNA BINDING PROTEIN 526 614 - -
Mtr7g3161 629 SUPERFAMILY RNA-binding domain, RBD 99 270 IPR035979 GO:0003676
Mtr7g3161 629 MobiDBLite consensus disorder prediction 438 508 - -
Mtr7g3161 629 SUPERFAMILY PABC (PABP) domain 536 616 IPR036053 GO:0003723
Mtr7g3161 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Mtr7g3161 629 SMART rrm2_1 293 365 IPR003954 GO:0003676
Mtr7g3161 629 SMART rrm2_1 190 262 IPR003954 GO:0003676
Mtr7g3161 629 SMART rrm2_1 11 84 IPR003954 GO:0003676
Mtr7g3161 629 SMART rrm2_1 99 171 IPR003954 GO:0003676
Mtr7g3161 629 SUPERFAMILY RNA-binding domain, RBD 6 94 IPR035979 GO:0003676
Mtr7g3161 629 MobiDBLite consensus disorder prediction 432 529 - -
Mtr7g3161 629 SMART rrm1_1 190 262 IPR000504 GO:0003723
Mtr7g3161 629 SMART rrm1_1 11 84 IPR000504 GO:0003723
Mtr7g3161 629 SMART rrm1_1 99 171 IPR000504 GO:0003723
Mtr7g3161 629 SMART rrm1_1 293 365 IPR000504 GO:0003723
Mtr7g3161 629 Gene3D - 531 623 - -
Mtr7g3161 629 CDD RRM2_I_PABPs 97 172 IPR045305 -
Mtr7g3161 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 266 IPR000504 GO:0003723
Mtr7g3161 629 Gene3D - 280 385 IPR012677 -
Mtr7g3161 629 Gene3D - 179 279 IPR012677 -
Mtr7g3161 629 CDD RRM4_I_PABPs 291 369 - -
Mtr7g3161 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 258 IPR000504 GO:0003723
Mtr7g3161 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 362 IPR000504 GO:0003723
Mtr7g3161 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 168 IPR000504 GO:0003723
Mtr7g3161 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Mtr7g3161 629 Gene3D - 98 178 IPR012677 -
Mtr7g3161 629 CDD RRM1_I_PABPs 11 90 - -
Mtr7g3161 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 369 IPR000504 GO:0003723
Mtr7g3161 629 Pfam Poly-adenylate binding protein, unique domain 539 604 IPR002004 GO:0003723
Mtr7g3161 629 PANTHER POLYADENYLATE-BINDING PROTEIN 5 505 - -
Mtr7g3161 629 PANTHER POLYADENYLATE-BINDING PROTEIN 526 614 - -
Mtr7g3161 629 SUPERFAMILY RNA-binding domain, RBD 289 381 IPR035979 GO:0003676
Mtr7g3161 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 175 IPR000504 GO:0003723
Mtr7g3161 629 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 10 605 IPR006515 GO:0003723
Mtr7g3161 629 Gene3D - 2 95 IPR012677 -
Mtr7g3161 629 Coils Coil 261 281 - -
Mtr7g3161 629 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 532 609 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3161 Mtr-Chr7 48598007 48602547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3161 10 627 Eukaryotic Initiation Factors Gene Family AT2G36660 54.896 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3161 K13126 - gmx:100779547 1021.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3161 7 48598007 48602547 Mtr7g3161 7 48598007 48602547 ECH
Mtr7g3161 7 48598007 48602547 Mtr1g2102 1 30967748 30971600 PCT