Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3138 ATGGAACCTCATAATAACCACCACGTTGATGATGTCTCTCCTTCGGAAATCGGATATGGACATTTCGGGTGCTCACATTATAAAAGGAGATGCAAGATCATATCACCCTGTTGCAATGAAATTTTCGATTGCAGACATTGCCATAACGAATCCAAGAATTCGATTCAAGTTGATCCTCAACACCGCCACGACATTCCTCGCCATCATGTTAAGAGGGTCATCTGTTCATTGTGTAGCACTGAGCAAGATGTTCAACAGGTTTGCATTCAATGTGGTGTTTGCATGGGTAGATACTTCTGCTCCAAATGCAAGTTCTTTGATGACGATGTATCAAAAAATCAATATCATTGCGATGAATGTGGCATATGCAGAACTGGAGGTGAAGAGAACTTTTTCCACTGTAACAAATGTGAATGTTGTTATTCAACGTTGATGAAGGACTCACACCATTGTATTGAAAAAGCAATGCATCAAAATTGCCCAGTTTGCTTTGAGTTTCTTTTCGATACTACTAAAGACATCACTGTATTGCCGTGTGGTCATACCATACATTTGGGATGTGTGAGAGAAATGCAACAACATCTCCAATATTCATGCCCTGTTTGCTCGAAATCATTCTGTGACATGTCGCGTGTGTGGGAGAAAATGGATGAGGAGGTTTGGATTCTATGTAACGACTGCGGAGAAACATCCGAAGTAAGATTTCATATTGTGGCACACAAGTGCCTTAGTTGCAAGTCCTACAACACCAGAAAGACACAAGCTGCATCATGCTTGTCAAGAATAGAAGAGATGGTTAGATGA 804 0.408 MEPHNNHHVDDVSPSEIGYGHFGCSHYKRRCKIISPCCNEIFDCRHCHNESKNSIQVDPQHRHDIPRHHVKRVICSLCSTEQDVQQVCIQCGVCMGRYFCSKCKFFDDDVSKNQYHCDECGICRTGGEENFFHCNKCECCYSTLMKDSHHCIEKAMHQNCPVCFEFLFDTTKDITVLPCGHTIHLGCVREMQQHLQYSCPVCSKSFCDMSRVWEKMDEEVWILCNDCGETSEVRFHIVAHKCLSCKSYNTRKTQAASCLSRIEEMVR* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3138 267 ProSiteProfiles Zinc finger CHY-type profile. 17 93 IPR008913 GO:0008270
Mtr7g3138 267 SUPERFAMILY RING/U-box 158 209 - -
Mtr7g3138 267 Pfam CHY zinc finger 24 105 IPR008913 GO:0008270
Mtr7g3138 267 SUPERFAMILY CHY zinc finger-like 20 95 IPR037274 GO:0008270
Mtr7g3138 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 205 IPR013083 -
Mtr7g3138 267 Pfam zinc-RING finger domain 159 204 IPR001841 -
Mtr7g3138 267 SMART ring_2 160 202 IPR001841 -
Mtr7g3138 267 ProSiteProfiles Zinc finger CTCHY-type profile. 95 159 IPR017921 -
Mtr7g3138 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 2 265 - -
Mtr7g3138 267 Pfam Zinc-ribbon 217 251 IPR039512 -
Mtr7g3138 267 Gene3D - 217 260 - -
Mtr7g3138 267 ProSiteProfiles Zinc finger RING-type profile. 160 203 IPR001841 -
Mtr7g3138 267 SUPERFAMILY Zinc hairpin stack 96 153 IPR037275 -
Mtr7g3138 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 2 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3138 Mtr-Chr7 48338329 48341059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3138 22 251 C2H2 Transcription Factor Family AT3G18290 38.400 2.48e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3138 K10144 - zju:107431972 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3138 7 48338329 48341059 Mtr7g3138 7 48338329 48341059 ECH