Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3134 ATGTTCAAAACAATATGCATATTGCTAATTATCTCTGTTCTAAGTTCATTTTCACAACTTGGAACAGCAATGCTGAACTTAACTCTTCCTGGAACACACCCTGACCCTGATGCTGTTGCCCACGAAGTTCATAGGAAGGTGAATGCTTCAATAGCAAGAAGGGAAATGCTATCTGGATCTGCATGCATGACTGGTAACCCGATTGACGATTGTTGGAAATGCGATCCAGAATGGCCCAACAATCGTCAAAGGTTAGCTGATTGTGCAATCGGGTTTGGTCAGTATGCTAAAGGAGGAAAAGGTGGTGAATTTTACGTTGTAACAGATTCATCAGATGATGATGCTGTTACCCCAAAACCAGGTACATTAAGATATGGTGTGATAAAAAATGAACCATTGTGGATAGTGTTCCCTAGTAACATGATGATTAAGCTGAAGCAAGAGCTTATATTTAATAGTTATAAGACTATTGACGGACGTGGAGCTGATGTTCACATTGTGGGAGGAGGATGCATTACTTTGCAGTTTATTAGTAATGTTATAATACATAACATTCATATTCACCATTGTCACCCCTCAGGGAACACAAATGTGAGATCAAGTCCTGAACACTTTGGCTACAGAACAATGTCAGACGGAGATGGAATATCCATATTCGGTTCAAAAGACATATGGGTCGACCATTGCACACTCTCACATTGCAAAGATGGACTAATAGACGCAGTAATGGGATCAACAGGAATAACGATATCCAACAACTTCATGTCACACCACAACGAAGTCATGCTTCTTGGACACAGCGATGACTACCTCCCAGACTCGGGAATGCAAGTCACAATCGCATTCAACCATTTTGGCGAGAAACTTGTACAAAGGATGCCGCGATGCAGAAGAGGATACATCCATGTGGTCAACAATGATTTCACTGAGTGGGAAATGTATGCCATTGGGGGGAGTGGTGAACCAACTATTAACAGTCAAGGGAACCGTTACTTTGCGCCGATTAATCCTTTTGCTAAAGAGGTTACTAAGAGGGTTGAAACTGAGCAAAATAAGTGGAAAGGGTGGAATTGGAGGTCTGAGGGTGATGTTATGGTTAATGGTGCATTTTTTGTTACATCTGGTGACACTCTAGAGGTTAAGTATGAGAAGGCTTATAGTGTTGAACCTCAGTCTGCTGATCGGATTGTTCTTCTTACCATGAACTCTGGTGTTCTTGGTAATGCAAGAGACAATAACTTGGGAATGTGGAGCAGAGGACCAAGCAGCAACAGTGACGGCGTTTTAGATTCTGGCCCGGATTACACAGATGATATGTCAGGGAGTGCGCGAGTGTTGCCGTCTTCTTTTACTATTGTGATGTGCTTCTTGTTGTCTTATAGAGTGCTACCATTAACAATTATTCAATGA 1410 0.4184 MFKTICILLIISVLSSFSQLGTAMLNLTLPGTHPDPDAVAHEVHRKVNASIARREMLSGSACMTGNPIDDCWKCDPEWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDDDAVTPKPGTLRYGVIKNEPLWIVFPSNMMIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHIHHCHPSGNTNVRSSPEHFGYRTMSDGDGISIFGSKDIWVDHCTLSHCKDGLIDAVMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYFAPINPFAKEVTKRVETEQNKWKGWNWRSEGDVMVNGAFFVTSGDTLEVKYEKAYSVEPQSADRIVLLTMNSGVLGNARDNNLGMWSRGPSSNSDGVLDSGPDYTDDMSGSARVLPSSFTIVMCFLLSYRVLPLTIIQ* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3134 469 Gene3D - 65 407 IPR012334 -
Mtr7g3134 469 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Mtr7g3134 469 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Mtr7g3134 469 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Mtr7g3134 469 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Mtr7g3134 469 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Mtr7g3134 469 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Mtr7g3134 469 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Mtr7g3134 469 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Mtr7g3134 469 Pfam Pectate lyase 146 325 IPR002022 -
Mtr7g3134 469 PANTHER PECTATE LYASE 12-RELATED 3 423 - -
Mtr7g3134 469 PANTHER PECTATE LYASE 18-RELATED 3 423 IPR045032 GO:0030570
Mtr7g3134 469 SUPERFAMILY Pectin lyase-like 61 397 IPR011050 -
Mtr7g3134 469 SMART amb_all 140 337 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3134 Mtr-Chr7 48308957 48313179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3134 1 459 Polysaccharide Lyase AT3G53190 74.732 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3134 K01728 - gmx:100775595 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3134 7 48308957 48313179 Mtr7g3134 7 48308957 48313179 ECH
Mtr7g3134 7 48308957 48313179 Mtr1g2142 1 31537493 31542340 PCT