Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3124 ATGGATTTTCCGTTCAACGATTTTCCCTTCGACGACGACATTCCCGTTGAGTTCCGCAACTTCGACGAAAGCGCAATTCCCACCCGAGAACAACTCATGGACGCCGGAGCAGATCCCAGATTCATTAATTTAGTCCTAAACGGCCACTCCGGCGACGAAGAAGAAGACGACGAAGACGATGAAGATGAAGACGATGAAGAATATGTTCCCGATGTGCCGTCGTCTAGGGTTTCCCGATCCGACGAAGTAAGTGTTATTCCCGGCGACGAGAGAAACAAACGCCGCAGAATTGAAGGAGGAGAGGCTTCTTCGTTGTCGATTCCGATTGAAAGTGTTGATTGTAGCCAAGAGAATGAATGCAACCGTACCGATATTGATGGACTCATTTGTCCTATTTGTATGGATGCTTGGACCAATGAGGGCGATCATCACATTTGTTGTCTTCCTTGTGGACACATTTATGGCATGTCATGCGTCAGAAAATGGCTTCAACAGAAAAAAAATTCTGGGAAGTGTCCGCAATGTAATAGAAGATGTTCGATGAAGGATGTGAGGAAACTCTATGCTTCTAGAGTAGTTACTGTTGATGAAGAATCTCAGAAGATGATTCGGTCACTTGAGAACAAATGTGCTTCTCTTGAGAGTAAGGATGGTAGTTGGCGCAAGAAAGAAGAGGGATGGATGAAGAGAGAAGCTGCATTGCTTTTTGATGTCCAGAACCTTAAGAAGAAAAACACTTATTTGGAGCAGCTGGTACTAGATATGAAGAGTAGACAATCTGGATTTTTTGAATTTCAGAATGCATTTCACCTGCATGGTGCTCGTGTATTTGATATGGACACTTCTAATCAAATTGTAATAATCGCACAAAAGCCAAAAGGAATGGGTGATGTGCACAGTATAACTAAAATGAGCTTGATATCTCCATTTGAGATGCAACATATTGAACTGCCTTCATCTACAAATGGTGTTAGAGACCTGCACATTTCTCCTTTTGGTAGTAAACAGGCCCTCTATGCGTCATTTGGGAAGCAATTATCAGTGCTCAGCTTGGACAGCGGCACCCCTGTTCTCAATTATGATCTAGAGGTTCCTGCTTGGTCCTGTTCATGGGATCGCAACAGTACGCATTGCATATATGCTGGACTACAGAATGGTAAAGTCCTGGTGTTTGACATGAGACAAACTGCAGGACCCTTAAAATCTCTAGCTGGGTTGACTAGCAACCCTGTTCATAGTTTGCAGTCTCTTGCACAAACAACGGGTCTTTCTTCTGGTGTCAGAACCATTCTATCTGCATCTGCCATCGGTGCTTGTCAGTGGGACATTGATTCTGATGATCGGCCATTTATGGTTCATGGGACTGATAATCAAGAAGTTTGTATATCCCTTGCCTATTCCCCGAGCAGTGATGACACTGTTGTTTCATACCGTCCAAAGCTCAACACGTTGACGGGTGAGCTTATTGGACAAGGAGTACAGGGCTCTCATGTATTATTAAAAAGAACAGGTGGTAATAATTTCCAAAAGATGGGTTCTTCGTATGGCAATGTAAGTAAAATTCGACTACCAAGATGTATAATTATAAACATTGCGAATCAGAATAGAATGTTTGCATCTGGAGATGAAGTTACATGTGACTTGGTCTTGCAAGAGTTGCCATCTTTTAGAGTTATTCAGCGATTCAAAATGCCAGCTCAAGCCCGTGATATCAGGTACTCACCTAGTCATGGAATGCTTGGTTGTTTAAGTGAGAATTCATTGCAAATTTTCCGTACCAATCTCTCGTGA 1791 0.4283 MDFPFNDFPFDDDIPVEFRNFDESAIPTREQLMDAGADPRFINLVLNGHSGDEEEDDEDDEDEDDEEYVPDVPSSRVSRSDEVSVIPGDERNKRRRIEGGEASSLSIPIESVDCSQENECNRTDIDGLICPICMDAWTNEGDHHICCLPCGHIYGMSCVRKWLQQKKNSGKCPQCNRRCSMKDVRKLYASRVVTVDEESQKMIRSLENKCASLESKDGSWRKKEEGWMKREAALLFDVQNLKKKNTYLEQLVLDMKSRQSGFFEFQNAFHLHGARVFDMDTSNQIVIIAQKPKGMGDVHSITKMSLISPFEMQHIELPSSTNGVRDLHISPFGSKQALYASFGKQLSVLSLDSGTPVLNYDLEVPAWSCSWDRNSTHCIYAGLQNGKVLVFDMRQTAGPLKSLAGLTSNPVHSLQSLAQTTGLSSGVRTILSASAIGACQWDIDSDDRPFMVHGTDNQEVCISLAYSPSSDDTVVSYRPKLNTLTGELIGQGVQGSHVLLKRTGGNNFQKMGSSYGNVSKIRLPRCIIINIANQNRMFASGDEVTCDLVLQELPSFRVIQRFKMPAQARDIRYSPSHGMLGCLSENSLQIFRTNLS* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3124 596 MobiDBLite consensus disorder prediction 47 102 - -
Mtr7g3124 596 MobiDBLite consensus disorder prediction 51 69 - -
Mtr7g3124 596 SUPERFAMILY RING/U-box 123 182 - -
Mtr7g3124 596 Pfam Ring finger domain 130 176 IPR001841 -
Mtr7g3124 596 PANTHER RFWD3 PROTEIN 48 592 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Mtr7g3124 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 247 IPR013083 -
Mtr7g3124 596 Coils Coil 196 216 - -
Mtr7g3124 596 SMART ring_2 130 175 IPR001841 -
Mtr7g3124 596 Gene3D - 270 477 IPR015943 GO:0005515
Mtr7g3124 596 SUPERFAMILY WD40 repeat-like 266 594 IPR036322 GO:0005515
Mtr7g3124 596 CDD mRING-C3HGC3_RFWD3 126 176 - -
Mtr7g3124 596 ProSiteProfiles Zinc finger RING-type profile. 130 176 IPR001841 -
Mtr7g3124 596 MobiDBLite consensus disorder prediction 83 100 - -
Mtr7g3124 596 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 48 592 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3124 87 188 C3H Transcription Factor Family AT5G48655 23.729 7.03e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3124 K15691 - gmx:100818898 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3124 7 48218606 48223842 Mtr7g3124 7 48218606 48223842 ECH