Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3117 ATGGGAAGATCTCCTTGCTGTGACAAAGCTAATGTAAAGAAAGGTCCATGGTCTCCTGAAGAAGATGCAAAACTAAAGGAATACATAGAGAAACATGGAACTGGAGGAAACTGGATTACTCTGCCAAAAAAAGTTGGTTTGACAAGGTGTGGCAAGAGTTGTAGACTAAGATGGCTTAACTATCTCAGACCAAACATTAAGCATGGAGAGTTCTCTGACTCTGAAGATAAAATAATATGCACCCTCTTTGCTAGCATTGGAAGCAGATGGTCAATAATAGCATCTAAGTTAGAAGGCAGAACTGACAATGATGTAAAGAACTACTGGAATACCAAGCTTAAGAAAAAGATTATGTCCATGAATCATTCAGTGGAGATGAAACCTCAACAAGTTACCCTTTTATCCATCCTTCAAAACTCAACAAAATCATCTCCATCGTTATCATTCACAAACAGCTCCTTTTCCTACTCATCTACATCATCAAGTCTTCTGAGTGGAAATTCTTCTACTTCTGCAGCACAAGAAAGTTACATTAGTCCCTCTAAGAACAATAGCAAAAACCAAATCAACCATGTCATAGATCAAGGACTTGTTGAAGAGTGTGGTGATGCAACTTTTGTAGAGCAGAATAATATTGATTCTGTTGATTACATATACAGTGAGGTGGAAGATAGTGAGAAGTTAATGTTCTCTAATGCTGGTAGTGTTAATGGATTGTGGGGAGAAAATCCATTGGATTATGGTATAGATGAAATTAAACAGCTAATAAGCACTTCTGCATCTACTAGTAGTTGCAACAACTTTTTGTTTGATGAGTAA 819 0.37 MGRSPCCDKANVKKGPWSPEEDAKLKEYIEKHGTGGNWITLPKKVGLTRCGKSCRLRWLNYLRPNIKHGEFSDSEDKIICTLFASIGSRWSIIASKLEGRTDNDVKNYWNTKLKKKIMSMNHSVEMKPQQVTLLSILQNSTKSSPSLSFTNSSFSYSSTSSSLLSGNSSTSAAQESYISPSKNNSKNQINHVIDQGLVEECGDATFVEQNNIDSVDYIYSEVEDSEKLMFSNAGSVNGLWGENPLDYGIDEIKQLISTSASTSSCNNFLFDE* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3117 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Mtr7g3117 272 CDD SANT 16 62 IPR001005 -
Mtr7g3117 272 Gene3D - 7 68 - -
Mtr7g3117 272 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mtr7g3117 272 PANTHER OS09G0431300 PROTEIN 1 265 - -
Mtr7g3117 272 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mtr7g3117 272 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mtr7g3117 272 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr7g3117 272 PANTHER TRANSCRIPTION FACTOR RAX3 1 265 - -
Mtr7g3117 272 SMART sant 13 64 IPR001005 -
Mtr7g3117 272 SMART sant 67 115 IPR001005 -
Mtr7g3117 272 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Mtr7g3117 272 CDD SANT 70 113 IPR001005 -
Mtr7g3117 272 Gene3D - 69 134 - -
Mtr7g3117 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3117 Mtr-Chr7 48152936 48154801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3117 1 165 MYB Transcription Factor Family AT2G36890 63.314 6.79e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr7g3117 Myb_DNA-binding 5.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3117 K09422 - gmx:778084 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3117 7 48152936 48154801 Mtr7g3117 7 48152936 48154801 ECH