Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3108 ATGGCGAATCAACCCGAATCCTCCGATGCTAAGGGAACTACAAAAAGAGATTTCAGCACTGCAATTCTCGAACGCAAAAAAGCCCCAAATCGTTTGGTTGTTGATGAAGCTGTTAACGATGACAACTCCGTCGTCGCTCTTCATCCCGAGACTATGGAAAAGCTTCAACTATTCCGCGGTGACACTATCTTGATCAAGGGTAAGAAAAGGAAAGATACTATATGTATTGCACTCGCTGATGAAACATGTGAAGAGCCAAAAATAAGAATGAACAAGGTTGTGAGGAACAATCTTAGGGTTAGGCTTGGAGATGTTGTTTCGGTGCATCAATGTGCTGATGTCAAATATGGAAAGAGAGTTCACATTCTTCCCGTCGATGATACTATTGAAGGAGTTACTGGGAATCTCTTTGATGCATACTTAAAACCTTATTTCTTGGAGGCATATCGACCAGTGAGGAAAGGTGACTTCTTCCTTGTGAGAGGTGGGATGAGAAGTGTAGAATTCAAGGTTATTGAAACCGACCCACATGAGTACTGTGTTGTTGCCCCTGACACGGAGATTTTCTGTGAAGGAGAGCCCATTAAAAGGGAAGATGAGAATCGCTTAGATGAGGTTGGTTATGATGACGTTGGTGGTGTGAGAAAGCAGATGGCACAGATTAGGGAACTGGTTGAATTGCCACTGAGGCACCCACAATTATTCAAGTCTATTGGTGTCAAGCCACCAAAGGGGATTCTCTTGTATGGACCCCCTGGTTCTGGAAAGACTTTAATTGCTCGGGCAGTTGCAAATGAAACAGGTGCCTTCTTTTTCTGCATTAATGGCCCTGAGATAATGTCGAAACTTGCTGGTGAGAGTGAAAGCAATCTAAGGAAGGCATTTGAGGAAGCTGAGAAGAATGCACCTTCCATCATCTTTATTGATGAGATAGATTCCATAGCTCCTAAGCGAGAGAAAACTCACGGTGAAGTAGAGAGGAGGATTGTCTCCCAACTCTTGACCCTTATGGATGGTCTTAAATCACGTGCACATGTAATTGTTATGGGAGCCACAAATAGGCCCAATAGCATTGACCCTGCACTTAGGAGGTTTGGAAGGTTTGATAGGGAGATTGATATTGGTGTTCCAGACGAGGTTGGGCGTCTTGAGGTTCTTCGAATTCATACAAAGAATATGAAACTCGCCGAAGATGTTGATTTAGAAAAGATTTCTAAGGAGACACATGGCTATGTTGGTGCTGATTTAGCTGCTTTGTGTACCGAAGCAGCACTTCAATGCATCAGGGAAAAAATGGACGTGATTGACTTGGAAGATGAGACAATTGATGCTGAAATATTGAACTCCATGGCAGTGACAAATGAGCATTTCGCGACTGCGCTCGGATCAAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTGCCTAATTGCAGCTGGGATGATATCGGCGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGACTGTCCAATATCCAGTGGAACACCCTGAAAAGTTTGAGAAGTTTGGAATGTCGCCTTCGAAGGGAGTTCTTTTCTATGGTCCTCCTGGATGTGGTAAAACACTATTGGCAAAAGCTATTGCCAATGAATGCCAGGCAAACTTTATCAGTATCAAAGGTCCCGAGCTACTCACAATGTGGTTTGGAGAAAGTGAGGCAAACGTGAGGGAAATTTTTGACAAGGCCCGTGGTTCTGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCCATTGCAACTCAGAGAGGTAGTAGTGTAGGAGATGCTGGGGGTGCTGCCGACAGGGTTTTGAACCAGTTGCTAACAGAAATGGATGGGATGTCAGCAAAGAAAACTGTGTTCATCATTGGCGCAACTAATCGACCGGACATTATAGATCCAGCTCTTCTGCGTCCAGGCCGTCTAGACCAGTTGATTTATATCCCCCTCCCAGATGAAGATTCCCGTCATCAGATATTTAAAGCTTGCTTGAGAAAATCTCCCATCTCTAAAGATGTTGACATTAGAGCTCTTGCAAAGTACACCCAAGGCTTTAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCTTGCAAGTATGCCATAAGAGAGAACATTGAGAAGGACATTGAAAAAGAGAGAAAGAGAAGCGAGAACCCCGAGGCCATGGAAGAGGACATTGAAGATGAAGTAGCTGAAATCAAGGCAGCTCATTTTGAGGAATCGATGAAATACGCTCGGAGGAGTGTAAGCGACGCTGACATTCGCAAGTACCAGGCATTCGCCCAAACATTGCAGCAGTCCAGAGGGTTTGGAACCGAGTTTCGGTTTGCAGATTCTGGCACCAGTGGTGCTGCTGCTGCAGGTGCATCTGATCCATTTTCATCTGCTGCTGGAGCTGATGATGATGATCTTTACAATTAG 2430 0.4457 MANQPESSDAKGTTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPETMEKLQLFRGDTILIKGKKRKDTICIALADETCEEPKIRMNKVVRNNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETDPHEYCVVAPDTEIFCEGEPIKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKISKETHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFATALGSSNPSALRETVVEVPNCSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERKRSENPEAMEEDIEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFADSGTSGAAAAGASDPFSSAAGADDDDLYN* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3108 809 Gene3D - 469 652 IPR027417 -
Mtr7g3108 809 ProSitePatterns AAA-protein family signature. 346 364 IPR003960 GO:0005524|GO:0016887
Mtr7g3108 809 Gene3D - 656 764 - -
Mtr7g3108 809 CDD AAA 212 375 - -
Mtr7g3108 809 Pfam Cell division protein 48 (CDC48), domain 2 133 196 IPR004201 -
Mtr7g3108 809 Gene3D - 114 210 - -
Mtr7g3108 809 SUPERFAMILY Cdc48 domain 2-like 113 205 IPR029067 -
Mtr7g3108 809 MobiDBLite consensus disorder prediction 1 21 - -
Mtr7g3108 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 765 IPR027417 -
Mtr7g3108 809 SMART CDC48_2_2 131 197 IPR004201 -
Mtr7g3108 809 MobiDBLite consensus disorder prediction 784 809 - -
Mtr7g3108 809 Pfam ATPase family associated with various cellular activities (AAA) 246 375 IPR003959 GO:0005524|GO:0016887
Mtr7g3108 809 Pfam ATPase family associated with various cellular activities (AAA) 519 652 IPR003959 GO:0005524|GO:0016887
Mtr7g3108 809 SMART AAA_5 515 654 IPR003593 -
Mtr7g3108 809 SMART AAA_5 242 378 IPR003593 -
Mtr7g3108 809 SMART CDC48_N_2 31 114 IPR003338 -
Mtr7g3108 809 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 32 768 IPR005938 GO:0016787
Mtr7g3108 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 467 IPR027417 -
Mtr7g3108 809 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 5 782 - -
Mtr7g3108 809 Pfam Cell division protein 48 (CDC48), N-terminal domain 31 112 IPR003338 -
Mtr7g3108 809 CDD AAA 485 652 - -
Mtr7g3108 809 Gene3D - 9 113 - -
Mtr7g3108 809 PANTHER AAA-FAMILY ATPASE 5 782 - -
Mtr7g3108 809 Gene3D - 377 468 - -
Mtr7g3108 809 SUPERFAMILY ADC-like 28 111 IPR009010 -
Mtr7g3108 809 Pfam AAA+ lid domain 674 715 IPR041569 -
Mtr7g3108 809 Pfam AAA+ lid domain 398 440 IPR041569 -
Mtr7g3108 809 ProSitePatterns AAA-protein family signature. 622 640 IPR003960 GO:0005524|GO:0016887
Mtr7g3108 809 Gene3D - 211 375 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3108 Mtr-Chr7 48035597 48039916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3108 448 711 Calmodulin-binding Proteins AT3G56690 46.970 2.67e-78 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3108 K13525 - gmx:100791603 1522.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3108 7 48035597 48039916 Mtr7g3108 7 48035597 48039916 ECH