Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3089 ATGAAAGAAAAGAGAAAAGGTTGCAGTCCAACTGAGATGAATATGGAGTCAAAGAAGAAATTGAAAAATGTGAACAAGAGTGTGGACCCTCAGCTATGGCATGCCGTTGCAGGAGGAATGGTTCAAATGCCAGAAGTTAACTCACAGGTCTTCTACTTCCCTCAGGGTCACGCCGAGCATGCTTGTGAGCCTGTGAATTTCAGTTCTTACTCCAAAATTCCGTCTTTCATTCCATGTAGAGTTGAAGCTATAAGATATATGGCTAATCATGAGACCGATGAAGTGTATGCAAAACTCAGACTTGTCCCTATGAATATTAACCAGGTTAGTTTTGATAATGATGGTGTTGCTGGCATCAACGTGTCCGAAACAAAGGATAAACATCAATCTTTTGCGAAAACCTTGACACAATCTGATGCAAACAATGGTGGTGGCTTTTCTTGTCCTAGATATTGTGCAGAAACGCTTTTTCCTCGTTTGGACTATTCAGCTAACCCTCCTCTTCAGGATATTTTTCCCAAGGATGTTCATGGCGAAAAGTGGCATTTCAGGCACGTTTATAGGGGCACGCCGAAGAGGCATTTGTTGACAACTGGATGGAGTCCTTTTGTCAGCGACAAGAAACTTGCGTCTGGGGATTCGATTGTGTTTTTGAGATCTGAAAACGGCGATCTTCATGTTGGAATTCGGAGGGCTAAAAGGCGAAATAATGTTGGAGTCGATCCTTTGTCAGGGTGGAAATCTGGTAGTGGAATTGGAATTTGTGCTGCACCACCTTACGGAGGATTTCCATCGTTTTCGGGAGAGGAAGATAATAAACTTCGAAGAAACGGTAAAGGTAATGGATTGCTAATAAGTGATGGAATGATGGGTAGGGGGAAGGTGAAAGCTCTAGAAGTTATTGAAGCAGTAAGACTCGGTACTAATATGCAGCCGTTTGATGTGGTTTATTATCCTCGGTCGGGTACTCCTGAGTTTTTTGTGAAAACTTCTTTAATTGGAATGGCACTTCAGATTAGGTGGTGTCCTGGAATGAGGTTCAAGATGGCCATTGAAACCGAGGACTCATCAAGGATAAGTTGGTTTATCGGAACTGTTGCTTCTGTTCAGGCTGCTGATCCGTCATGGTCTGATTCTATGTGGAGACTTCTCGAGGTTACATGGGATGAACCTGAGTTACTTAAAAATGTGAAAAGAGTGAATCCGTGGCAAGTTGAAATAGTATCGAACATGCCTTCGATCCCTCTTTCGCCTTTCATACCGCCAAGGAAGAAATTGAGATTGCCTCAACTCCCAGATTTCCCAATTGATGGCCAATTTCCAATGCCAACTTTTCCAAACAACCTTCTAAGTCCTAATATTCCAATTTTTTATTTACCCGAAACTAGTCCTGCCGGCATGCAGGGAGCCAGGCATGGTCATTTCGGTGTTACCTTACCAGATTTTCATAATCTTCCATTAGGTCTCTTTCAGCCTAGTTTCCAACAACCGTTTAATAATATTGCGACAATGCCGATGACTGTCCCTAATAACCCGGCATTGCAAAAGCCGAACACCAGTGAGAACGTTTCATGCTCGCATTCGATATCAACTTCTGCACAATCTTCAGAGAAACCGGATCATGCAAAGCCGCACCAACTTGTGCTTTTTGGCCAAACAATACAAGTTGACGCTGGAAATGAAAATTCCGAGAAGAAAATGTCTAATCATTTGTCTGATCTTCATCTACAAGGCCTGTCGTCAAGATCATCTGATGCGAGGTTCGAGTGGAATGCTGAGAACCAACACGAAGAAACATTGGCAGGAGAAACATTAGAGATGAAACATTCAGAGACTTCATCAGAAAAGCTAGGAGGTTGA 1860 0.428 MKEKRKGCSPTEMNMESKKKLKNVNKSVDPQLWHAVAGGMVQMPEVNSQVFYFPQGHAEHACEPVNFSSYSKIPSFIPCRVEAIRYMANHETDEVYAKLRLVPMNINQVSFDNDGVAGINVSETKDKHQSFAKTLTQSDANNGGGFSCPRYCAETLFPRLDYSANPPLQDIFPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPFVSDKKLASGDSIVFLRSENGDLHVGIRRAKRRNNVGVDPLSGWKSGSGIGICAAPPYGGFPSFSGEEDNKLRRNGKGNGLLISDGMMGRGKVKALEVIEAVRLGTNMQPFDVVYYPRSGTPEFFVKTSLIGMALQIRWCPGMRFKMAIETEDSSRISWFIGTVASVQAADPSWSDSMWRLLEVTWDEPELLKNVKRVNPWQVEIVSNMPSIPLSPFIPPRKKLRLPQLPDFPIDGQFPMPTFPNNLLSPNIPIFYLPETSPAGMQGARHGHFGVTLPDFHNLPLGLFQPSFQQPFNNIATMPMTVPNNPALQKPNTSENVSCSHSISTSAQSSEKPDHAKPHQLVLFGQTIQVDAGNENSEKKMSNHLSDLHLQGLSSRSSDARFEWNAENQHEETLAGETLEMKHSETSSEKLGG* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3089 619 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Mtr7g3089 619 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Mtr7g3089 619 Pfam Auxin response factor 306 384 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr7g3089 619 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 610 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr7g3089 619 SMART B3_2 131 233 IPR003340 GO:0003677
Mtr7g3089 619 SUPERFAMILY DNA-binding pseudobarrel domain 126 234 IPR015300 -
Mtr7g3089 619 MobiDBLite consensus disorder prediction 593 619 - -
Mtr7g3089 619 MobiDBLite consensus disorder prediction 510 537 - -
Mtr7g3089 619 MobiDBLite consensus disorder prediction 510 542 - -
Mtr7g3089 619 Gene3D - 340 413 - -
Mtr7g3089 619 Gene3D - 129 233 IPR015300 -
Mtr7g3089 619 CDD B3_DNA 130 231 IPR003340 GO:0003677
Mtr7g3089 619 PANTHER AUXIN RESPONSE FACTOR 16 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3089 Mtr-Chr7 47717148 47720090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3089 26 487 B3 DNA Binding Superfamily AT4G30080 54.947 3.82e-169 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr7g3089 B3 6.8e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3089 - - mtr:MTR_7g101280 1251.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3089 7 47717148 47720090 Mtr1g3491 1 46380253 46383290 ECH
Mtr7g3089 7 47717148 47720090 Mtr1g2199 1 32267348 32271074 ECH
Mtr7g3089 7 47717148 47720090 Mtr7g3089 7 47717148 47720090 ECH
Mtr7g3089 7 47717148 47720090 Mtr4g1726 4 29941141 29944883 ECH