Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3080 ATGCTTAATCTTATTGGTTTTTCGTTGTTGACTATGGATTCGGTGCCTTATAGGGGATTGCTTCAGACATTCTTCATACTCAATTATGTTTTGGTTTGCCAACTTGTCATTATTCAACCCTTTGTTTCTGCTTCAGGAAATGCAGCTGAGTTGTTTGAGAAAGCATCCCGAAGTATAAAAGGGAAACATTATACTGAGGCACTTAATGATCTAGATGCTGCAATAGAAGCAGATCCAAACCTTTCAGAAGCATACCTTTCCCAGGCTTCAGTTCTTCGCAAGTTATGCAGATATGAGCAATCTGAGAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCCGGACATTCAATTGCAGAAAAGGAGCTCTCTCAGCTATTGCAGGCTCAAAGTGCGCTCCAAACAGCTCAGTCCCTCTATGAGTCAGCCAACTTCACAAAATCTTTGGAATACATTGATAAAGTTGTTCTTGTTTTCTCTCCAGCCTGCACTAAGGCTAAGCTTCTAAAAGTGAGGTTGTTGATAGCTGATAAAGAGTATGAGGGTGCAATTGCTGAGTCTGGTTTTCTTCTCAAGGAAGATGAAAACAATTTAGAGGCATTGTTGTTACGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTTCTACAAGGCATTACCAGAAAGGTCTTCGCCTAGATCCTGAGCATAGTGAACTGAAAAAAGCATACTTTGGACTGAAAAATCTACTCAAAAAGAGTAAAAGTGCTGAAGATAACGCGAGTAAGGGCAAGCTACGGGTGGCAGTGGAGGAATTCAAGGCTGCACTTGCTGTTGACCCTGACCATCTTGCACATAATGTACATCTTCATCTTGGCCTGTGTAAAGTGCTAGTCAGGCTTGGCAGAGGAAAAGACGCCTTGAACAGTTGTAGTGAAGCTCTTAAGATCGATGAGGAACTTATTGATGCTCTTGTTCAGAGGGGAGAAGCTAAACTCTTGACGGAAGACTGGGAGGGAGCTGTTGAAGATCTGAAATCAGCTGCTCAAAAATCTCCTCAGGATATGAATATTCGTGAAGCATTAATGAGGGCTGAAAAAGCTTTAAAGATCAGCAAACGCAAGGATTATTACAAGATTTTGGAAATTTCAAAACATGCTTCCGCTGCTGAGATAAAACGCGCATACAAGAAACTTGCCTTACAATGGCACCCGGATAAGAATGTGGACAAAAGGGAAGAAGCAGAGGCTAAATTCCGAGAAATCGCTGCTGCATACGAGGTTCTAAGTGATGAAGACAAACGCACAAGATACGACCAAGGGGAGGACCTTGAAGAATCAGGAATGGGTGGTGGCGGCGGCGGTGGAGGTTTCAATCCATTCGGCGGTGGTGGACAGCAATTTCACTTTACTTTTGATGGTGGCTTCCCTGGTGGAGGCTTTCCCGGAGGCGGCGGCGGCGGTTACGAATTTCATTTTTGA 1461 0.4326 MLNLIGFSLLTMDSVPYRGLLQTFFILNYVLVCQLVIIQPFVSASGNAAELFEKASRSIKGKHYTEALNDLDAAIEADPNLSEAYLSQASVLRKLCRYEQSERSYKKFLELKPGHSIAEKELSQLLQAQSALQTAQSLYESANFTKSLEYIDKVVLVFSPACTKAKLLKVRLLIADKEYEGAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVSTRHYQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVAVEEFKAALAVDPDHLAHNVHLHLGLCKVLVRLGRGKDALNSCSEALKIDEELIDALVQRGEAKLLTEDWEGAVEDLKSAAQKSPQDMNIREALMRAEKALKISKRKDYYKILEISKHASAAEIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEVLSDEDKRTRYDQGEDLEESGMGGGGGGGGFNPFGGGGQQFHFTFDGGFPGGGFPGGGGGGYEFHF* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3080 486 Pfam Tetratricopeptide repeat 61 115 - -
Mtr7g3080 486 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 10 486 IPR044620 -
Mtr7g3080 486 Gene3D DnaJ domain 367 476 IPR036869 -
Mtr7g3080 486 SMART tpr_5 48 81 IPR019734 GO:0005515
Mtr7g3080 486 SMART tpr_5 82 115 IPR019734 GO:0005515
Mtr7g3080 486 SMART tpr_5 197 230 IPR019734 GO:0005515
Mtr7g3080 486 SMART tpr_5 281 314 IPR019734 GO:0005515
Mtr7g3080 486 SMART tpr_5 315 348 IPR019734 GO:0005515
Mtr7g3080 486 Pfam DnaJ domain 369 432 IPR001623 -
Mtr7g3080 486 CDD DnaJ 369 424 IPR001623 -
Mtr7g3080 486 Pfam Tetratricopeptide repeat 198 230 IPR019734 GO:0005515
Mtr7g3080 486 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Mtr7g3080 486 ProSitePatterns Nt-dnaJ domain signature. 412 431 IPR018253 -
Mtr7g3080 486 Coils Coil 405 425 - -
Mtr7g3080 486 SUPERFAMILY Chaperone J-domain 363 472 IPR036869 -
Mtr7g3080 486 SMART dnaj_3 368 427 IPR001623 -
Mtr7g3080 486 Gene3D Tetratricopeptide repeat domain 44 366 IPR011990 GO:0005515
Mtr7g3080 486 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Mtr7g3080 486 PRINTS DnaJ domain signature 371 389 IPR001623 -
Mtr7g3080 486 PRINTS DnaJ domain signature 389 404 IPR001623 -
Mtr7g3080 486 PRINTS DnaJ domain signature 407 427 IPR001623 -
Mtr7g3080 486 PRINTS DnaJ domain signature 427 446 IPR001623 -
Mtr7g3080 486 ProSiteProfiles dnaJ domain profile. 369 435 IPR001623 -
Mtr7g3080 486 SUPERFAMILY TPR-like 63 364 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3080 Mtr-Chr7 47617254 47622734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3080 365 432 C2H2 Transcription Factor Family AT1G74250 45.833 7.47e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3080 K09523 - gmx:100804685 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3080 7 47617254 47622734 Mtr7g3080 7 47617254 47622734 ECH