Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3077 ATGAATATTCTTGGTGACCCCTTTTCACCATCCTCTTCCACCGGAGGTTTTGACAAACTTCAAAACACAAACCCTAACCCTAACCGACCACAAACCAACAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCTGAAGTCATTGCTCTTTCTCCCAAGACTCTAATGGCCACGAACCGATTCGTCTGCGAAATATGCAACAAAGGATTCCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGTCACAACCTACCATGGAAGCTAAAGCAAAGATCCAACAAAGAACCAAGGAAAAAGGTATACATCTGCCCGGAGAATACTTGTGTCCACCACGACGCGGCTAGGGCCTTGGGTGACCTCACCGGAATAAAGAAACATTTTAGTAGAAAACATGGCGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTCCAATCTGATTGGAAAGCTCACACTAAAACTTGTGGTACTAGAGAATATAAGTGTGATTGTGGTACACTCTTCTCAAGGAAGGATAGCTTTATTACACACAGAGCTTTCTGCGACGCATTAGCCGTAGAAAGTGCAAGACACTCATCTCCTACAACTCTAAATTTCCAGAATGAAGAGTCCAATATGATGAACACACAAACTAGTTTGGCCCATGGATTGATATCATCTCAAGGACTTCAAAATATTCAACAATTTAGTCCACATGCAGGATTTCATCATGAGCAAAGACCAAATTTGTCACTGTGGTTGAACCAAGAAAATCAACAGATTAATCATCATTCATATTCACTTGATCATGTTTCATCAGGTTTTTCCGATGTTATACAAATGGCTCAAACTAATACTCCAATGTCAGCTACTGCACTTCTTCAGAAAGCAGCTCAAATAGGTTCAACAAGAAGCAGTACTAATCCTTCCATATTTAGTGGAAGTTTTGGTGTAATGAGTTCATCCTCTACACAAACAACGAGTTTAAACAAAAACCATGATGAGGTTAATATGGTCATTAATCAGAAAATGAAGCAGCATGAGAATTTTGATCCAAGTAGTAGTAGAAGTGCAACTATGGTTGGTAATTCTAGTGGGTTTAGAGATTTTCTTGGAGTGAGTAACCATCAATTTCTACCTCAAGAGCTTGCAAAGTTTGCTTCCATAAATTCAACGATGATGAGTTTAAATCAATTCAATGCTGGGTGCATCAATGAAAATTAA 1221 0.3915 MNILGDPFSPSSSTGGFDKLQNTNPNPNRPQTNKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPENTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAVESARHSSPTTLNFQNEESNMMNTQTSLAHGLISSQGLQNIQQFSPHAGFHHEQRPNLSLWLNQENQQINHHSYSLDHVSSGFSDVIQMAQTNTPMSATALLQKAAQIGSTRSSTNPSIFSGSFGVMSSSSTQTTSLNKNHDEVNMVINQKMKQHENFDPSSSRSATMVGNSSGFRDFLGVSNHQFLPQELAKFASINSTMMSLNQFNAGCINEN* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3077 406 MobiDBLite consensus disorder prediction 1 46 - -
Mtr7g3077 406 Gene3D Classic Zinc Finger 59 86 - -
Mtr7g3077 406 SMART c2h2final6 139 159 IPR013087 -
Mtr7g3077 406 SMART c2h2final6 63 85 IPR013087 -
Mtr7g3077 406 SMART c2h2final6 104 134 IPR013087 -
Mtr7g3077 406 Pfam Zinc finger, C2H2 type 63 85 IPR013087 -
Mtr7g3077 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Mtr7g3077 406 PANTHER ZINC FINGER PROTEIN JACKDAW 8 389 IPR033243 GO:0003700
Mtr7g3077 406 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Mtr7g3077 406 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 389 - -
Mtr7g3077 406 MobiDBLite consensus disorder prediction 1 38 - -
Mtr7g3077 406 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Mtr7g3077 406 Gene3D Classic Zinc Finger 98 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3077 Mtr-Chr7 47589608 47591742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3077 285 388 IDZ Gene Family AT5G03150 42.857 1.13e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr7g3077 zf-C2H2 0.0039 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3077 K25870 - gmx:100789331 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3077 7 47589608 47591742 Mtr7g3077 7 47589608 47591742 ECH