Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3074 ATGTTTTATAGCAACCGCTTTATTACATTGTCTCCTTCTTCTTCTTCTTCTTATTCTTCAAATAAATCAAACAAACCCTTCTCACCTTCTTCTTGCGTTGCGTGTTCCAGATCGTTACTCAACCGCTTCCGCTTCTTCACCGATTCGTTTCTTGTTGCTGTTGGTGTGTTGTACATATCACATCTACATCCACTGGTTGAATTATTTGCATATCTGACTCAATTACACTATTTTTTACTATTGGGGGTTGCAAGTGCAATTATGGGGCATAGACACTTATTCAATGCATCTCCAATGTTTGAGGGCGAGGCTGACCCGAATTGGAATAATATGCTGACTGATCAACATCATGTGAACCATGGTGGGACCAGCTCTTCAGAAAATGGTTCTTTTATTTATCCTGTGGAAAATATGTCTATAGATAACATTTATTTCCCTTCTCATTGGAACGCCAACACAAGGTCAAATGGATATGCATCCTCAGGCCCCAATATTGAAGTACCACCTCCTCATCAATTGGACACATCGGGCACTTCTACTAATGATCATTTTATGCATTCGTCTAGTGCTGGACCTTTCTTTGCAGTATCTGAAAACTTTGTACACCAGCCTTCTTCTTCCAATTATGACAGACAAGCATTTCATGTTGATAGTGGTTTTATTGATCTTACAATGGGGAGTGGACGAGCGCATCACAAGAGGAAGAGCCCTGGAATTCCTTCAGTCTATGAGAGAGGCAGTTCAAGTGGGTATTTCAATGCTGGGACTTCAAGTGATCTTCCGATACCTCCAGAATCATGGCCAGAGAAACCAAATATGGATCCTCAATATATGCCTTGGGATCATGCTGCTATGGCACCCACATTCAGAGGTGCTGGTCTCTCAATGAAGGGTGAGAGTTCTGTAAGGAATGTTAGGAGCCGTTCTTCACTTGATTTGGAATCCAACCTGTGTAGGACCCATTTATCAAGTAGCCATTCACACAACTCGTATCCTACTGTCCCACCAGTCAGCCATTCTAGCTTGGCGGATCTTTCTCAGGTTTCCACCTCTCTGACAAGGGATTGGAGCCAAATGAACGTAACTCCTGCTAATGGAAGAGTGTTATTACCAGATGCTAGTACTTTTGGTCTTGAGACAAGTCACTTCCCTGTTGGAAATGCTGCTGCTGCTGCCGCTGCTAGTAATGCTACTGTAGATGTTGGAAGCTTCCATCATGATTTTGGCACAAGCAGAAACCCTACTACTGCTCAAAGTTTTCAAAATTTAACTCAGACTGCTAGGGGAACTCGAAGTAATTACTCTCAGAGATCCACTCCAGCTTATAGGGCTTCTTCAAGCTTGCGCTTGGGTCAAGCGACACCTTCAGATAATGGGTTGCCCATGGTAGCTGAAGGTTACCCTTCTAGACATCCAAGGCCATTGAACACTGTTGGCTGGCGGAACAGTGACAGAAATGGAAGGTCAAGAATTTCTAGTGAAAGATATAGATCACTGGCTGATCAGGCTGCTCTCCATGCAAGATTATCATCCTCTGAGGGTTTTATGATTGTTGAGCGTGCCTCACTATATGGTTCTAGGAATGTGCTTGATCAGCACAGAGAAATGAGGATGGACATTGATAACATGAGCTATGAGGAACTACTTGCACTTGGGGAGAGGATTGGCCAAGTGAACACAGGATTGTCTGAGGATGTTCTTTCCAAGTGTGTGACAGAAACAATATATTGTTCATCTGACCAATGTCAGGATGAAGGAAGCTGTGTGATCTGTCTGGAAGAGTACAAGAACATGGACGATGTTGGGACACTTAAAACTTGTGGACATGACTACCATGTAAGCTGCATCAAAAAGTGGTTATCTATGAAGAAACTATGTCCTATCTGCAAATCTTCTGCTTTGCCTGAGGATAAGAAGGATAAATAA 1926 0.4289 MFYSNRFITLSPSSSSSYSSNKSNKPFSPSSCVACSRSLLNRFRFFTDSFLVAVGVLYISHLHPLVELFAYLTQLHYFLLLGVASAIMGHRHLFNASPMFEGEADPNWNNMLTDQHHVNHGGTSSSENGSFIYPVENMSIDNIYFPSHWNANTRSNGYASSGPNIEVPPPHQLDTSGTSTNDHFMHSSSAGPFFAVSENFVHQPSSSNYDRQAFHVDSGFIDLTMGSGRAHHKRKSPGIPSVYERGSSSGYFNAGTSSDLPIPPESWPEKPNMDPQYMPWDHAAMAPTFRGAGLSMKGESSVRNVRSRSSLDLESNLCRTHLSSSHSHNSYPTVPPVSHSSLADLSQVSTSLTRDWSQMNVTPANGRVLLPDASTFGLETSHFPVGNAAAAAAASNATVDVGSFHHDFGTSRNPTTAQSFQNLTQTARGTRSNYSQRSTPAYRASSSLRLGQATPSDNGLPMVAEGYPSRHPRPLNTVGWRNSDRNGRSRISSERYRSLADQAALHARLSSSEGFMIVERASLYGSRNVLDQHREMRMDIDNMSYEELLALGERIGQVNTGLSEDVLSKCVTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSALPEDKKDK* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3074 641 Pfam Ring finger domain 587 630 IPR001841 -
Mtr7g3074 641 MobiDBLite consensus disorder prediction 156 178 - -
Mtr7g3074 641 MobiDBLite consensus disorder prediction 426 491 - -
Mtr7g3074 641 MobiDBLite consensus disorder prediction 426 454 - -
Mtr7g3074 641 CDD RING-H2_TTC3 587 630 - -
Mtr7g3074 641 SMART ring_2 588 629 IPR001841 -
Mtr7g3074 641 MobiDBLite consensus disorder prediction 1 27 - -
Mtr7g3074 641 SUPERFAMILY RING/U-box 579 633 - -
Mtr7g3074 641 ProSiteProfiles Zinc finger RING-type profile. 588 630 IPR001841 -
Mtr7g3074 641 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 88 637 IPR045191 GO:0061630
Mtr7g3074 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 553 634 IPR013083 -
Mtr7g3074 641 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 88 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3074 Mtr-Chr7 47549366 47556692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3074 88 640 C3H Transcription Factor Family AT2G37150 40.714 5.33e-108 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3074 - - gmx:100803627 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3074 7 47549366 47556692 Mtr7g3074 7 47549366 47556692 ECH