Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr7g3067 | ATGGCGAACGACTCGTCGTTTTTGTTCGCCGGTATTCATTTCGATAGAAAGAAATTCGGCGCCGATATTGCACGCTTCCAGAAAAAAGACACGGATAACAGTTTTGCGAAGATTCAGACCGTGACAGAAGATGAAGAAAGCAAGGAAACAATAGAAGCTGTGTCTGGAAAGAAGAGGAAGCGCAAGAAAACCTCTTCTGAAGCTGTTGACGGATTCAGTGTGTTCCGAAGTTCAACATCCAAGTCAAACGAAGAAGGCCAAGCCGATGATAATGATGAGTCCATTCGGCTGAAGAAAGAACAAAATAAGCAACTCGAGCGTGATGCTATCTTCAGGAAGAATCATAACATTCATGTCTCTGGTTACAATGTGCCGTCCCCACTTCAAAGCTTTGATGAGTTGAAAACAAGATATAAATGTCCATCCTATTTATTGTGGAAACTGGCAGAACTTGGATTCAGAGAACCAACACCAATCCAACGGCAGGCTATTCCAGTACTCTTACAGGACCGTGAATGTTTTGCGTGTGCCCCAACTGGCTCTGGAAAAACCCTTGCATTTGTGTGCCCCATGCTCATGAAGCTCAAGGCTCATGCAAAAGGTGGCGTTCGAGCTGTTATCATTTGTCATAGCCGTGAATTATCTGGTCAAACATACAGAGAGTGCAAAAAGCTGGCCAAAGGAGAAAAGTTTCGCATCAAGTTAATGACAAAAAATCTTTTAAGAAATGCTGATTTTTCAAAATTTTCTTGTGACATACTTATATCCACTCCACTTCGATTATGCTTGGCTATCAAGAAGAAAAAGGTTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAATCTGATAAGCTATTTGAGCCTCAATTGTTCAAGCAGATTGATTCTATTATCAAAGCATGCACAAACCCCTCAATAATACGCTCTCTGTTTAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATCGTTGGCAGGAAGAATATGGCTTCTGATACAATTAAGCAAAAGTTAGTTTTTACCGGAAGTGAAGAAGGAAAACTTCTAGCGATTCGGCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAGCGCGCGAAAGAGCTGTATGGGGAACTTGCATTCGACAATATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCAGTTGACAACTTCAGAGCTGGTAAAACATGGGTTTTGATTGCCACTGACGTGGTTGCTCGGGGAATGGATTTCAAAGGCATAAACTGTGTGATCAATTATGATTTCCCAGATTCTGCATCTGCATATATCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAGTGGGGAAGCGATTACATTTTACACAGAGGAGGACATTCCATTCCTGCGGAATGTATCTAATCTAATGGCATCCTCAGGCTGTGAAGTTCCATCTTGGTTGACGGAGTTGCAGTTGCAGAAGAAGAAGTGGAAGAAGCATCGACCTGACAGAGATTCTATCTCAACCAAACCAGATCTACCCAAAAGTGATTCGATCTCAACCAAACCGAAGTTGCAGAAGAAGTTGAAGAAGCACCGACCCAAAAAAGATTCTATCGTAACCAAACCGGATCTACCCAAAAGTGATTCGATCTCAACCAAACCGAAGTTGCAGAAGAAGTTGAAGAAGCACCGACCCAAAAAGGATTCTATTGTAACCAAACCAGATCTACCCAAAAGTGATTCGATCTCAACCAAACCGAAGTTGCAGAAGAAGTTGAAGAAGCACCGCGACCCGAAAGAGATTCTATCTTAA | 1860 | 0.4242 | MANDSSFLFAGIHFDRKKFGADIARFQKKDTDNSFAKIQTVTEDEESKETIEAVSGKKRKRKKTSSEAVDGFSVFRSSTSKSNEEGQADDNDESIRLKKEQNKQLERDAIFRKNHNIHVSGYNVPSPLQSFDELKTRYKCPSYLLWKLAELGFREPTPIQRQAIPVLLQDRECFACAPTGSGKTLAFVCPMLMKLKAHAKGGVRAVIICHSRELSGQTYRECKKLAKGEKFRIKLMTKNLLRNADFSKFSCDILISTPLRLCLAIKKKKVDLSRVEYLVLDESDKLFEPQLFKQIDSIIKACTNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASDTIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLRNVSNLMASSGCEVPSWLTELQLQKKKWKKHRPDRDSISTKPDLPKSDSISTKPKLQKKLKKHRPKKDSIVTKPDLPKSDSISTKPKLQKKLKKHRPKKDSIVTKPDLPKSDSISTKPKLQKKLKKHRDPKEILS* | 620 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr7g3067 | 619 | SMART | helicmild6 | 386 | 467 | IPR001650 | - | |
Mtr7g3067 | 619 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 164 | 479 | IPR027417 | - | |
Mtr7g3067 | 619 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 345 | 506 | IPR001650 | - | |
Mtr7g3067 | 619 | Coils | Coil | 88 | 108 | - | - | |
Mtr7g3067 | 619 | MobiDBLite | consensus disorder prediction | 46 | 96 | - | - | |
Mtr7g3067 | 619 | SMART | ultradead3 | 152 | 349 | IPR014001 | - | |
Mtr7g3067 | 619 | CDD | SF2_C_DEAD | 346 | 476 | - | - | |
Mtr7g3067 | 619 | Pfam | DEAD/DEAH box helicase | 157 | 321 | IPR011545 | GO:0003676|GO:0005524 | |
Mtr7g3067 | 619 | Pfam | Helicase conserved C-terminal domain | 364 | 467 | IPR001650 | - | |
Mtr7g3067 | 619 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 164 | 334 | IPR014001 | - | |
Mtr7g3067 | 619 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 | 6 | 526 | - | - | |
Mtr7g3067 | 619 | Gene3D | - | 72 | 333 | IPR027417 | - | |
Mtr7g3067 | 619 | Gene3D | - | 334 | 511 | IPR027417 | - | |
Mtr7g3067 | 619 | MobiDBLite | consensus disorder prediction | 510 | 619 | - | - | |
Mtr7g3067 | 619 | CDD | DEADc_DDX52 | 144 | 337 | IPR044764 | GO:0003724|GO:0005524|GO:0030490 | |
Mtr7g3067 | 619 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 6 | 526 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr7g3067 | Mtr-Chr7 | 47468532 | 47473993 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr7g3067 | 127 | 505 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.921 | 2.09e-51 | 181 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr7g3067 | K14779 | - | gmx:100800969 | 866.685 |