Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3067 ATGGCGAACGACTCGTCGTTTTTGTTCGCCGGTATTCATTTCGATAGAAAGAAATTCGGCGCCGATATTGCACGCTTCCAGAAAAAAGACACGGATAACAGTTTTGCGAAGATTCAGACCGTGACAGAAGATGAAGAAAGCAAGGAAACAATAGAAGCTGTGTCTGGAAAGAAGAGGAAGCGCAAGAAAACCTCTTCTGAAGCTGTTGACGGATTCAGTGTGTTCCGAAGTTCAACATCCAAGTCAAACGAAGAAGGCCAAGCCGATGATAATGATGAGTCCATTCGGCTGAAGAAAGAACAAAATAAGCAACTCGAGCGTGATGCTATCTTCAGGAAGAATCATAACATTCATGTCTCTGGTTACAATGTGCCGTCCCCACTTCAAAGCTTTGATGAGTTGAAAACAAGATATAAATGTCCATCCTATTTATTGTGGAAACTGGCAGAACTTGGATTCAGAGAACCAACACCAATCCAACGGCAGGCTATTCCAGTACTCTTACAGGACCGTGAATGTTTTGCGTGTGCCCCAACTGGCTCTGGAAAAACCCTTGCATTTGTGTGCCCCATGCTCATGAAGCTCAAGGCTCATGCAAAAGGTGGCGTTCGAGCTGTTATCATTTGTCATAGCCGTGAATTATCTGGTCAAACATACAGAGAGTGCAAAAAGCTGGCCAAAGGAGAAAAGTTTCGCATCAAGTTAATGACAAAAAATCTTTTAAGAAATGCTGATTTTTCAAAATTTTCTTGTGACATACTTATATCCACTCCACTTCGATTATGCTTGGCTATCAAGAAGAAAAAGGTTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAATCTGATAAGCTATTTGAGCCTCAATTGTTCAAGCAGATTGATTCTATTATCAAAGCATGCACAAACCCCTCAATAATACGCTCTCTGTTTAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATCGTTGGCAGGAAGAATATGGCTTCTGATACAATTAAGCAAAAGTTAGTTTTTACCGGAAGTGAAGAAGGAAAACTTCTAGCGATTCGGCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAGCGCGCGAAAGAGCTGTATGGGGAACTTGCATTCGACAATATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCAGTTGACAACTTCAGAGCTGGTAAAACATGGGTTTTGATTGCCACTGACGTGGTTGCTCGGGGAATGGATTTCAAAGGCATAAACTGTGTGATCAATTATGATTTCCCAGATTCTGCATCTGCATATATCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAGTGGGGAAGCGATTACATTTTACACAGAGGAGGACATTCCATTCCTGCGGAATGTATCTAATCTAATGGCATCCTCAGGCTGTGAAGTTCCATCTTGGTTGACGGAGTTGCAGTTGCAGAAGAAGAAGTGGAAGAAGCATCGACCTGACAGAGATTCTATCTCAACCAAACCAGATCTACCCAAAAGTGATTCGATCTCAACCAAACCGAAGTTGCAGAAGAAGTTGAAGAAGCACCGACCCAAAAAAGATTCTATCGTAACCAAACCGGATCTACCCAAAAGTGATTCGATCTCAACCAAACCGAAGTTGCAGAAGAAGTTGAAGAAGCACCGACCCAAAAAGGATTCTATTGTAACCAAACCAGATCTACCCAAAAGTGATTCGATCTCAACCAAACCGAAGTTGCAGAAGAAGTTGAAGAAGCACCGCGACCCGAAAGAGATTCTATCTTAA 1860 0.4242 MANDSSFLFAGIHFDRKKFGADIARFQKKDTDNSFAKIQTVTEDEESKETIEAVSGKKRKRKKTSSEAVDGFSVFRSSTSKSNEEGQADDNDESIRLKKEQNKQLERDAIFRKNHNIHVSGYNVPSPLQSFDELKTRYKCPSYLLWKLAELGFREPTPIQRQAIPVLLQDRECFACAPTGSGKTLAFVCPMLMKLKAHAKGGVRAVIICHSRELSGQTYRECKKLAKGEKFRIKLMTKNLLRNADFSKFSCDILISTPLRLCLAIKKKKVDLSRVEYLVLDESDKLFEPQLFKQIDSIIKACTNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASDTIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLRNVSNLMASSGCEVPSWLTELQLQKKKWKKHRPDRDSISTKPDLPKSDSISTKPKLQKKLKKHRPKKDSIVTKPDLPKSDSISTKPKLQKKLKKHRPKKDSIVTKPDLPKSDSISTKPKLQKKLKKHRDPKEILS* 620
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3067 619 SMART helicmild6 386 467 IPR001650 -
Mtr7g3067 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 479 IPR027417 -
Mtr7g3067 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 506 IPR001650 -
Mtr7g3067 619 Coils Coil 88 108 - -
Mtr7g3067 619 MobiDBLite consensus disorder prediction 46 96 - -
Mtr7g3067 619 SMART ultradead3 152 349 IPR014001 -
Mtr7g3067 619 CDD SF2_C_DEAD 346 476 - -
Mtr7g3067 619 Pfam DEAD/DEAH box helicase 157 321 IPR011545 GO:0003676|GO:0005524
Mtr7g3067 619 Pfam Helicase conserved C-terminal domain 364 467 IPR001650 -
Mtr7g3067 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 334 IPR014001 -
Mtr7g3067 619 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 526 - -
Mtr7g3067 619 Gene3D - 72 333 IPR027417 -
Mtr7g3067 619 Gene3D - 334 511 IPR027417 -
Mtr7g3067 619 MobiDBLite consensus disorder prediction 510 619 - -
Mtr7g3067 619 CDD DEADc_DDX52 144 337 IPR044764 GO:0003724|GO:0005524|GO:0030490
Mtr7g3067 619 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 526 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr7g3067 Mtr-Chr7 47468532 47473993 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3067 127 505 Eukaryotic Initiation Factors Gene Family AT3G19760 29.921 2.09e-51 181
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3067 K14779 - gmx:100800969 866.685
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3067 7 47468532 47473993 Mtr7g3067 7 47468532 47473993 ECH