Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3057 ATGTCCGAAACTCCGGCGAGTCCTGGCGGCGGCAGCCACGAAAGCGGCGAACACAGTCCTCGTTCCAACATCCGTGAACAAGACCGTTTCCTTCCTATCGCCAACATCAGCCGCATCATGAAAAAAGCTCTTCCTGCTAATGGTAAAATCGCTAAAGATGCTAAGGAAACCGTTCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAGACGATTAACGGTGATGATTTGCTTTGGGCGATGGCTACTTTAGGGTTTGAGGATTATATTGATCCTCTTAAGATTTACCTTACAAGATACAGAGAGATGGAGGGTGATACTAAGGGCTCTGCCAAGGGTGGAGACACATCTGGCAAGAAAGACGTTCAACAAGGTTCTAATCCTCAGCTTGTTCATCAAGGTTCTTTCTCACAAGGTGTTTCCTACACAAATTCTCAGGGTCAACATATGATGGTTCCTATGCAAGGTCCAGAGTAG 516 0.4729 MSETPASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGSAKGGDTSGKKDVQQGSNPQLVHQGSFSQGVSYTNSQGQHMMVPMQGPE* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3057 171 MobiDBLite consensus disorder prediction 119 171 - -
Mtr7g3057 171 SUPERFAMILY Histone-fold 27 133 IPR009072 GO:0046982
Mtr7g3057 171 Gene3D Histone, subunit A 17 149 IPR009072 GO:0046982
Mtr7g3057 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mtr7g3057 171 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mtr7g3057 171 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 158 - -
Mtr7g3057 171 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Mtr7g3057 171 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Mtr7g3057 171 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Mtr7g3057 171 MobiDBLite consensus disorder prediction 130 164 - -
Mtr7g3057 171 MobiDBLite consensus disorder prediction 1 28 - -
Mtr7g3057 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3057 Mtr-Chr7 47379868 47387596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3057 1 169 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.271 7.48e-88 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr7g3057 CBFD_NFYB_HMF 7.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3057 K08065 - gmx:100798667 315.464