Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3055 ATGTTGGATCTCAATCTCAACGCTGATTCCTCTCTTCCACTCTCCTCCGTCGTTCAGATGGAAGATTCATCCGGTAGCTTTGATTCCTCCGTCGTCAACGCTGCCGACACTGAAGATTCATGCTCTTACGGCGATGCATACGGTTACAACTTCGCCATACTCAACAACAACGCTTCCGTCGACAACAGTACTATCTCCGGTGAACTTCAACATTCCGGCGCCGGAGAAGCAGGTGTACGGACAATTCAGCTTTTTCCTGCTAACGAATCGGGAATGATCTCGCCATCTGAGAGTAGTGGATGGATGAATTTCTCGTCCGATCATCACGGTGGAGTACCGGAGCAGACTGCTGTTGTTGCTTCACGACCTCAGCAGGTGAAGAAGAGTCGTCGTGGACCGAGGTCACGAAGCTCGCAGTATCGTGGTGTTACTTTCTACCGGAGAACTGGACGTTGGGAATCTCATATTTGGGATTGTGGAAAACAAGTATACTTAGGTGGATTTGATACCGCGCATGCTGCGGCAAGAGCATATGATCGAGCTGCGATAAAGTTTCGTGGCGTGGATGCGGATATTAATTTCAATGTCAGTGATTATGATGAAGATATAAAGCAGATGAATAACTTTACAAAGGAAGAGTTTGTGCATATTCTGCGTAGACAGAGTACTGGTTTCTCAAGGGGAAGTTCTAAATACAGAGGAGTTACTCTGCATAAATGTGGACGATGGGAAGCTCGTATGGGACAGTTTCTTGGGAAGAAGTATATATATCTTGGGCTTTTTGATAGCGAGCTAGATGCTGCAAGAGCGTATGATAAGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAATTTTGAGGCTAGTTCTTATGAAGGAGAGTTAACTTCCCAGGCTGATAACGATGATATCAAGCAGAATCTGGATCTGAACTTGGGTATAGCTCCTCCTTCTAACTCTGATGTTCAAATGATGAACATGCACCACAATGGAAGTGGTTTGCAAGTTCAGCGTAACTGGGATGATATGCCTGTTGATAAGAGTGTAATGTTTGAGGACTCTGGGTCAAGATCACTCAATGTTCAGTCATCTTATGGCTTTCCCATAGCATCTGAGCATCAACCTCCAGTCTGGAGTGGTACTAATTACTTTCCCGTGTGTAAGGAAAGAGCAATAGAGAATAGGATGGAATCTGCTCCCGTTCCAAATTGGGCATGGCAGCTCCAAAGTCCATATAATAATGGGTCAACTTTGATTCTACCTAATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAACAGCTGCGGATAGTCAAATTCATTTTCCAAACATAACATACCTCCACCCTCATTTTCCTACACCAGTGACTAACTCCAGCCCCATACCCTCTTTCTACTGCAGGAGCTGA 1416 0.4506 MLDLNLNADSSLPLSSVVQMEDSSGSFDSSVVNAADTEDSCSYGDAYGYNFAILNNNASVDNSTISGELQHSGAGEAGVRTIQLFPANESGMISPSESSGWMNFSSDHHGGVPEQTAVVASRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMNNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELDAARAYDKAAIKCNGREAVTNFEASSYEGELTSQADNDDIKQNLDLNLGIAPPSNSDVQMMNMHHNGSGLQVQRNWDDMPVDKSVMFEDSGSRSLNVQSSYGFPIASEHQPPVWSGTNYFPVCKERAIENRMESAPVPNWAWQLQSPYNNGSTLILPNFSAAASSGFPSTTAADSQIHFPNITYLHPHFPTPVTNSSPIPSFYCRS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3055 471 ProSiteProfiles AP2/ERF domain profile. 231 288 IPR001471 GO:0003700|GO:0006355
Mtr7g3055 471 CDD AP2 230 290 IPR001471 GO:0003700|GO:0006355
Mtr7g3055 471 MobiDBLite consensus disorder prediction 117 139 - -
Mtr7g3055 471 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 461 - -
Mtr7g3055 471 SMART rav1_2 231 294 IPR001471 GO:0003700|GO:0006355
Mtr7g3055 471 SMART rav1_2 139 201 IPR001471 GO:0003700|GO:0006355
Mtr7g3055 471 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 461 - -
Mtr7g3055 471 SUPERFAMILY DNA-binding domain 138 197 IPR016177 GO:0003677
Mtr7g3055 471 Pfam AP2 domain 139 187 IPR001471 GO:0003700|GO:0006355
Mtr7g3055 471 Pfam AP2 domain 230 280 IPR001471 GO:0003700|GO:0006355
Mtr7g3055 471 PRINTS Ethylene responsive element binding protein signature 232 243 IPR001471 GO:0003700|GO:0006355
Mtr7g3055 471 PRINTS Ethylene responsive element binding protein signature 270 290 IPR001471 GO:0003700|GO:0006355
Mtr7g3055 471 CDD AP2 139 197 IPR001471 GO:0003700|GO:0006355
Mtr7g3055 471 Gene3D AP2/ERF domain 230 289 IPR036955 GO:0003700|GO:0006355
Mtr7g3055 471 Gene3D AP2/ERF domain 138 197 IPR036955 GO:0003700|GO:0006355
Mtr7g3055 471 ProSiteProfiles AP2/ERF domain profile. 139 195 IPR001471 GO:0003700|GO:0006355
Mtr7g3055 471 SUPERFAMILY DNA-binding domain 230 289 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3055 Mtr-Chr7 47352245 47355605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3055 117 369 AP2-EREBP Transcription Factor Family AT4G36920 66.016 6.51e-97 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Mtr7g3055 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3055 K09284 - gmx:100797238 649.432