Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3020 ATGGCAATGAAGAGACAAAGGAGCAATGAAGGCATAGATTATGCAAATTGTTTGATGCTACTATCTTGTCCACAACAAAAAAGCTATGAAAATGGTGAATATGAATGCAAAACGTGCAACAAAAAATTCTCATCTTTTCAAGCCCTTGGTGGCCATAGGGCTAGCCACAAGAGAATGAAACTAGCTGAAGGTGAAGAACTCAAAGAACAAGCAAAATCTCTTAGTTTGTGGAACAAACCAAAAATGCATGAGTGTTCTATTTGTGGTATGGGATTCTCTTTGGGTCAAGCATTAGGAGGACACATGAGAAAACATAGAGCTGTTATAAATGAAGGGGTTTCTTCCATCAATCAAATTATTGAAAAATTTCCAGTTTTGAAGAGATTGAATAGTAAGAGGATTATGGGGCTGGACTTGAATTTGACACCTCTAGAGAATGATGACTTGATGTTTGGAATTAAGTCACCACCAACACCAATTCCACTTTCTTTGTTTTGA 498 0.3695 MAMKRQRSNEGIDYANCLMLLSCPQQKSYENGEYECKTCNKKFSSFQALGGHRASHKRMKLAEGEELKEQAKSLSLWNKPKMHECSICGMGFSLGQALGGHMRKHRAVINEGVSSINQIIEKFPVLKRLNSKRIMGLDLNLTPLENDDLMFGIKSPPTPIPLSLF* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3020 165 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Mtr7g3020 165 Gene3D Classic Zinc Finger 31 105 - -
Mtr7g3020 165 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Mtr7g3020 165 PANTHER ZINC FINGER PROTEIN ZAT5 3 154 - -
Mtr7g3020 165 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 154 - -
Mtr7g3020 165 Pfam C2H2-type zinc finger 83 107 - -
Mtr7g3020 165 Pfam C2H2-type zinc finger 34 57 - -
Mtr7g3020 165 SMART c2h2final6 83 105 IPR013087 -
Mtr7g3020 165 SMART c2h2final6 34 56 IPR013087 -
Mtr7g3020 165 SUPERFAMILY beta-beta-alpha zinc fingers 34 105 IPR036236 -
Mtr7g3020 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Mtr7g3020 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3020 Mtr-Chr7 47084453 47085253 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3020 3 152 C2H2 Transcription Factor Family AT2G37430 48.214 2.29e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr7g3020 zf-C2H2_6 9.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3020 - - aprc:113870747 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3020 7 47084453 47085253 Mtr1g2274 1 33137706 33138418 PCT