Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3002 ATGGCGGCGTCACGGCGGCTCCGTGAACTTCAATCCGAACCCTCAAACAAGATCTGCGTCGACTGTTCCCAAAAAAATCCACAATGGGCCTCCGTTTCCTACGGCGTTTTCATGTGTCTCGAATGCTCCGGCAAACACCGTGGCCTCGGCGTTCACATCTCTTTCGTCCGATCCGTTACAATGGATTCATGGTCTGATCTCCAGATCAAGAAAATGGAAGCCGGTGGTAACCGCAATCTCAACACGTTCCTTTCTCAATACGGAATCTCTAAGGAAACTGATATCATCACCAAGTATAATTCAAACGCTGCTTCGATCTACCGCGACCGCATTCAAGCTATCGCAGAAGGTCGTTCGTGGCGCGATCCACCTGTTGTTAAGGAGAATGCTAGTACTCGTGCTGGAAAAGGAAAGCCACCTCTGGCTGCTGCGTCGAATGGTGGTGGTTGGGATGATAATTGGGATAATGATGATGGTGATAGTTATGGTTATGGATCGCGTGGTGGTGGTGATATTAGGAGGAATCAGAGTACCGGTGATGTAATTGGATTTGTTGGAAATGGTGTTACACCGTCATCGAGGTCGAAATCTACTGAGGATATTTACACGAGGACACAATTGGAGGCTTCTGCTGCGAATAAGGAAGGTTTTTTCGCGAAGAAGATGGCGGAGAATGAATCGAGACCGGAGGGGCTTCCTCCGTCGCAAGGTGGGAAGTATGTTGGATTTGGATCTAGTCCTGGGCCTGCTCAGAGGATTTCTCCTCAGAATGATTATTTGTCTGTTGTTTCTGAGGGAATTGGTAAATTGTCGATGGTTGCTCAATCTGCTACTAAAGAGATCACTGCCAAGGTAAAGGACGGTGGTTATGATCACAAGGTCAATGAAACTGTCAATATTGTCACTCAGAAGACATCAGAGATTGGACAAAGGACATGGGGTATAATGAAAGGGGTCATGGCGTTGGCCTCTCAAAAGGTTGAGGAGTTCACCAAAGATTACCCGGATGGGAATTCTGATAACTGGCCACGAAATGAAAATGATAGACATGATTTCAATCAAGAGAATAAAGGCTGGAATTCTTCTACTTCCACCAGAGAAGGACAACCTTCATCAGGTGGACAAACTAACACCTATCACTCAAACTCCTGGGATGATTGGGACAACCAAGATACAAGGAAGGAAGTACCAGCTAAAGGATCAGCTCCACATAATAATGATGATTGGGCTGGTTGGGATGATGCCAAAGATGATGATGATGAATTTGATGATAAATCTTTTGGTAATAATGGGACGTCAGGTTCTGGCTGGACAGGAGGAGGCTTTCACTAA 1332 0.461 MAASRRLRELQSEPSNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSDLQIKKMEAGGNRNLNTFLSQYGISKETDIITKYNSNAASIYRDRIQAIAEGRSWRDPPVVKENASTRAGKGKPPLAAASNGGGWDDNWDNDDGDSYGYGSRGGGDIRRNQSTGDVIGFVGNGVTPSSRSKSTEDIYTRTQLEASAANKEGFFAKKMAENESRPEGLPPSQGGKYVGFGSSPGPAQRISPQNDYLSVVSEGIGKLSMVAQSATKEITAKVKDGGYDHKVNETVNIVTQKTSEIGQRTWGIMKGVMALASQKVEEFTKDYPDGNSDNWPRNENDRHDFNQENKGWNSSTSTREGQPSSGGQTNTYHSNSWDDWDNQDTRKEVPAKGSAPHNNDDWAGWDDAKDDDDEFDDKSFGNNGTSGSGWTGGGFH* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3002 443 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Mtr7g3002 443 CDD ArfGap_ArfGap1 3 117 - -
Mtr7g3002 443 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Mtr7g3002 443 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Mtr7g3002 443 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Mtr7g3002 443 MobiDBLite consensus disorder prediction 225 255 - -
Mtr7g3002 443 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 442 IPR044519 GO:0005096|GO:0016192
Mtr7g3002 443 Pfam Putative GTPase activating protein for Arf 5 105 IPR001164 GO:0005096
Mtr7g3002 443 MobiDBLite consensus disorder prediction 386 401 - -
Mtr7g3002 443 MobiDBLite consensus disorder prediction 128 155 - -
Mtr7g3002 443 Gene3D Arf GTPase activating protein 1 132 IPR038508 -
Mtr7g3002 443 SUPERFAMILY ArfGap/RecO-like zinc finger 5 114 IPR037278 -
Mtr7g3002 443 MobiDBLite consensus disorder prediction 331 443 - -
Mtr7g3002 443 MobiDBLite consensus disorder prediction 356 385 - -
Mtr7g3002 443 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Mtr7g3002 443 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3002 Mtr-Chr7 46925783 46930050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3002 5 87 C2H2 Transcription Factor Family AT4G05330 48.810 7.91e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3002 K12492 - gmx:100778302 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3002 7 46925783 46930050 Mtr7g3002 7 46925783 46930050 ECH
Mtr7g3002 7 46925783 46930050 Mtr1g2301 1 33489711 33493654 PCT