Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2930 ATGGAAAATTCTGGAAAATCAATAATGAACAACAACACTAAATTATTGAATCCATGGATGCTTCATTTTCAAAAACTCGCTCTCGAACTCAAATGCCCTCTCTGCTTGAACTTGTTCAAGAAACCGGTTTTGTTACCATGCAATCATTTGTTCTGCAGTTCCTGTTTGGCGGATAGTACTTCGATTCGTTCTGAATGTGCTCTCTGTAACACCAAGTGCTCTCAAAAAGATATTAGGCATTTGCCTTTTGTTGAAAGTATAGTGACAATTTATAAAAGCTTGGATGCGACCTTTTGTGCAAACGCTTTTCAGCAACGTTCTTCTGATAATACGAGGGTTTTGGAGCAGTGCCAAACTCTTCACAATTCAGCTTTTAGTAATAAGGTTGATAAGGTTCTGCAGAATTCATGTATGTCGAATGAAGTTGGGGTTGGCAAGAATCACCAATCTGGGATTAAGATGAATGGTAAAGCCAAGGAGGTTGAAATGTCTTGCAAGAGAGGGGCTGACAACCACATTGCAGAGAAGCCCGATTCAATGAATTTGAATCAAGCGACACAATCAGAACCAGACAGCCCTCCATTTTGTGATACCAAAGGTTCTGACAATGGTTGCAGTGATCTAAACAGCGAGAAGCCACTCAGTCTTGGGAGGTCTGAAAGTTCGTCATTTAAAAGATCAAGCACAACAGGAAAAGGTAATTTGAAAGAAAGAATGCCTCATTTCTGGTCTGAAAGTTCTGCCTCTGAAAACGAGGATCTTACGAGAGATCTTAAGAGACAAAAGAATCTTACAAATGAAGATGGTATTGTTCAACAAAGCACCTCATATCATAACAAGCTTGTGGATTCCCGCTGTGACTTGGAAATTAAATCTGACAAGGACACTGGTGCACTCGTACCTTCAAATGCACCAAGTGACTTGTACCCAAGTACAAGCATTTGTTCGTTTTGTCAGTCCTCTAAAATTTCAGAGGCTACTGGGTCAATGCTGCATTATGCAAGTGGCATTTCAGTTACCGGAGAGGCTGCAATGGAACCAAATGTTGTGCATGTGCATAAAGTTTGTATTGACTGGGCACCACAAGTGTATTTTGTTGGTGAAACTGTTAAGAATTTGAAAGCAGAAGTGGCCCGGGGAGCAAAGCTTAAATGCACCAAATGCGGTAAAAAGGGAGCTGCTCTTGGTTGCTATGTCAAGTCATGTAGAAGAACTTATCATGTTCCTTGTGCAATGGACATCTCTGCTTGCCGCTGGGATCATGTGGATTATCTCTTGTTGTGTCCTAGTCATTCAAATGTCAAATTTCCAAACGAGAAATCTAATCTTGATAAACAGGCAACTCAGAAGCATCCCGTTTCATCTCATCTGCCATCTCAACAGTCAAACCAACTGGGAGCTGTTCAGGGTGATGGTAAAAAAATGGTTTTCTGTGGATCTGCTCTATCAAATGAAGAAAAGGTGCTATTGATTAATTTTGCAAGCAAGGTTGGTGCTACAGTGTCCAAGTGTTGGACCTCAGATGTCACACATGTGATCGCAGCAACTGATGCAAATGGAGCATGCTCCAGGACATTGAAAGTTTTGAGGGCGATTCTAAATGGACAATGGATCCTAAAAATGGACTGGATAAGAGCATGCATGAAAGCGATGAATCTTGTAGAAGAAGAACTGTATGAAATTGATCTTGACAACCAAGGGTGTCAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGTGAATATGATTCGAGTTATAAGAAATATCTTGAAGATTTAGTTGAAGGGGGAGGAGGTGTTGTTTTGAAAAGCAAGGATGAATTGGAAGTTGGAAGAGATGCAAATTTGTTGGCAGTTTACAATCTTGATCCCCCAGAAGGATGTGAGCTGGAGGACGAAGTTTCAATTCTTTGGCATAGATTAACCGAAGCAGAGAATTTAACTGCCAATACTGCTGGTCACACGTGGATTCTGGAGTCAATTGCTGCATGCAAATTGCAGCCTTTTGTTAGCTAA 2064 0.4109 MENSGKSIMNNNTKLLNPWMLHFQKLALELKCPLCLNLFKKPVLLPCNHLFCSSCLADSTSIRSECALCNTKCSQKDIRHLPFVESIVTIYKSLDATFCANAFQQRSSDNTRVLEQCQTLHNSAFSNKVDKVLQNSCMSNEVGVGKNHQSGIKMNGKAKEVEMSCKRGADNHIAEKPDSMNLNQATQSEPDSPPFCDTKGSDNGCSDLNSEKPLSLGRSESSSFKRSSTTGKGNLKERMPHFWSESSASENEDLTRDLKRQKNLTNEDGIVQQSTSYHNKLVDSRCDLEIKSDKDTGALVPSNAPSDLYPSTSICSFCQSSKISEATGSMLHYASGISVTGEAAMEPNVVHVHKVCIDWAPQVYFVGETVKNLKAEVARGAKLKCTKCGKKGAALGCYVKSCRRTYHVPCAMDISACRWDHVDYLLLCPSHSNVKFPNEKSNLDKQATQKHPVSSHLPSQQSNQLGAVQGDGKKMVFCGSALSNEEKVLLINFASKVGATVSKCWTSDVTHVIAATDANGACSRTLKVLRAILNGQWILKMDWIRACMKAMNLVEEELYEIDLDNQGCQGGPKAGRLRALANEPKLFSGLKFYFSGEYDSSYKKYLEDLVEGGGGVVLKSKDELEVGRDANLLAVYNLDPPEGCELEDEVSILWHRLTEAENLTANTAGHTWILESIAACKLQPFVS* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2930 687 Pfam BRCA1 C Terminus (BRCT) domain 473 548 IPR001357 -
Mtr7g2930 687 Gene3D BRCT domain 472 577 IPR036420 -
Mtr7g2930 687 SMART ring_2 32 69 IPR001841 -
Mtr7g2930 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 104 IPR013083 -
Mtr7g2930 687 MobiDBLite consensus disorder prediction 177 194 - -
Mtr7g2930 687 ProSiteProfiles BRCT domain profile. 471 561 IPR001357 -
Mtr7g2930 687 SUPERFAMILY BRCT domain 586 684 IPR036420 -
Mtr7g2930 687 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 9 685 - -
Mtr7g2930 687 ProSiteProfiles BRCT domain profile. 582 687 IPR001357 -
Mtr7g2930 687 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Mtr7g2930 687 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 9 685 IPR031099 GO:0006281|GO:0006974
Mtr7g2930 687 Pfam Zinc finger, C3HC4 type (RING finger) 32 69 IPR018957 GO:0046872
Mtr7g2930 687 Pfam BRCT domain, a BRCA1 C-terminus domain 584 684 IPR001357 -
Mtr7g2930 687 CDD BRCT_Bard1_rpt1 476 554 - -
Mtr7g2930 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 434 IPR013083 -
Mtr7g2930 687 ProSiteProfiles Zinc finger RING-type profile. 32 70 IPR001841 -
Mtr7g2930 687 MobiDBLite consensus disorder prediction 172 255 - -
Mtr7g2930 687 Gene3D BRCT domain 584 680 IPR036420 -
Mtr7g2930 687 MobiDBLite consensus disorder prediction 442 464 - -
Mtr7g2930 687 SUPERFAMILY RING/U-box 29 92 - -
Mtr7g2930 687 SUPERFAMILY BRCT domain 475 562 IPR036420 -
Mtr7g2930 687 MobiDBLite consensus disorder prediction 202 234 - -
Mtr7g2930 687 ProSiteProfiles Extended PHD (ePHD) domain profile. 312 432 IPR034732 -
Mtr7g2930 687 SMART BRCT_7 584 680 IPR001357 -
Mtr7g2930 687 SMART BRCT_7 469 551 IPR001357 -
Mtr7g2930 687 Pfam PHD-like zinc-binding domain 353 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2930 Mtr-Chr7 46109258 46115560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2930 29 78 C3H Transcription Factor Family AT3G07200 34.000 1.74e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2930 K10683 - gmx:100784883 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2930 7 46109258 46115560 Mtr7g2930 7 46109258 46115560 ECH