Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2892 ATGGATTTTTATTCTTCCGCAAATTTATTTGATATTTCATGGGAAGAATTGTTTATGTTCAACAACATTGACTCCAATTCTTCATCATATAGTGGTGAAATGGATTTACAAGAACTCACATACAATGGCCACGTTGAAGAAGAAAACTCACCACAACCATCACTTGCTCCAAAAACCCTAAATCCAAAACCACCATCATGCAAAAGTACAAACCATTCACACGTGAATCCAACAAAACGAGAGAAGAGGCTCTATAGAGGAGTGAGGACACGACCGTGGGGAAAATTCGCAGCAGAGATAAGGGACACAACAAGAAATGGTGTTCGTGTGTGGATTGGAACATTTGATACAGCTGAAGCAGCTGCTTTAGCTTATGACCAAGCAGCTTTCTTAACACGAGGATATAGGGCTATCCTTAACTTCTCTGAGCATGTTGTGAAGGAGTCTCTTCAAAACATGAATTTTAAGACATTGTTAAATCAAGGTTGCTCACCTTTATTAGAACTAAAAAGGATGCATGTGTTGAGAACAAGGTCTAAGAACCCTAGTAAAAAGGGAAAAAGGGATTCCAAGAGCATGGTGTTGAACAATGCTCAAAATGTGTTGGTGTTGGAAGATTTGGGTTCTGAATATCTAGAGCAACTTTTGATGAGTTCTGTTTCCCTTGAAGGTGTTGGAAATCATCAAGTCTTTATACAAAGCTAA 705 0.3858 MDFYSSANLFDISWEELFMFNNIDSNSSSYSGEMDLQELTYNGHVEEENSPQPSLAPKTLNPKPPSCKSTNHSHVNPTKREKRLYRGVRTRPWGKFAAEIRDTTRNGVRVWIGTFDTAEAAALAYDQAAFLTRGYRAILNFSEHVVKESLQNMNFKTLLNQGCSPLLELKRMHVLRTRSKNPSKKGKRDSKSMVLNNAQNVLVLEDLGSEYLEQLLMSSVSLEGVGNHQVFIQS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2892 234 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 220 - -
Mtr7g2892 234 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Mtr7g2892 234 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Mtr7g2892 234 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Mtr7g2892 234 PANTHER DNA-BINDING DOMAIN 11 220 IPR044808 GO:0003700|GO:0009873
Mtr7g2892 234 MobiDBLite consensus disorder prediction 45 80 - -
Mtr7g2892 234 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
Mtr7g2892 234 SUPERFAMILY DNA-binding domain 84 143 IPR016177 GO:0003677
Mtr7g2892 234 CDD AP2 85 144 IPR001471 GO:0003700|GO:0006355
Mtr7g2892 234 Pfam AP2 domain 85 130 IPR001471 GO:0003700|GO:0006355
Mtr7g2892 234 Gene3D AP2/ERF domain 84 144 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2892 Mtr-Chr7 45699069 45699891 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2892 78 219 AP2-EREBP Transcription Factor Family AT3G23240 56.643 4.79e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr7g2892 AP2 5.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2892 K14516 - gmx:100818907 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2892 7 45699069 45699891 Mtr1g1373 1 16657610 16658528 PCT
Mtr1g2406 1 34644386 34644901 Mtr7g2892 7 45699069 45699891 PCT