Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2887 ATGGCACAATCTTCTTCACACTATGCTTTACTCATATTTGTCATTGTTGTACTAAGTATCTTGGTTACTACTTTCATATTTATCACCTACTTGATTTTTGTGACCAAATGCTGCTTAAATTGGCACCCATTGAGATGGATTTCCATCCTGCCACCTCCACAAAATGAAGAACCCTTCATAGCATTCTCTCCAAGGATTTGGACTCGCGGCGTCGATGAATCCGTCATCCAAGGAATACCAACATTTCAATTCACAAAAGGAGAAGGTGATGATGATAATCATCAAAGTGTAAAGGGTTGTGTTGTTTGTTTGAATTCTTTCCAAGAACATGATATGCTAAAAGTACTTCCTAACTGCAGCCACCACTTTCACTTGGATTGCATTAACATTTGGCTTCAAACAAATGCAAACTGCCCTCTTTGTAGAACAAGCATTTCAGGTAACACACAATTTCCAATGAACCGTATCATAGCTGCACCAAGCTCTTCTCCACAGGATTCTCAGTTACTCTCTAACATGGGTAGTGATGAAGATTTTGTGGTCATTGAATTATGGGGAGATGGAGAGAATCGGGGATCACGGTCTCAGGTTCAGCAAGATCGAAATGAGTCAAGGGAAAGACTAGAAACGCTGAGTAGAACTCACTCTACAACTAGGAAAACGGAGGAGAAGAAGAAGGCAGTGCAGTTGAAACCATGGAAGTGCCACCATGGTACCATAATGGATGATGAGTGTATTGATGTTAGAAAAAAAGATGATCAGTTTTCAATTCAGCCTATCAGAAGATCCTTCTCATTGGATTCTGCAAGTGATAGAAAAGCTTATGTAGATGTTCAACACATCATCCAACAGAATAATAGGCATCAAAATGAGGATTGTGGAATCAACAGTGAGGGCTGTAACTATGAAGATTGTAATAGCAGTAGTAACAGGGGTCGAAGATCTTTCTTTCCATTTCGTTATGGTAGGGTATAA 975 0.3969 MAQSSSHYALLIFVIVVLSILVTTFIFITYLIFVTKCCLNWHPLRWISILPPPQNEEPFIAFSPRIWTRGVDESVIQGIPTFQFTKGEGDDDNHQSVKGCVVCLNSFQEHDMLKVLPNCSHHFHLDCINIWLQTNANCPLCRTSISGNTQFPMNRIIAAPSSSPQDSQLLSNMGSDEDFVVIELWGDGENRGSRSQVQQDRNESRERLETLSRTHSTTRKTEEKKKAVQLKPWKCHHGTIMDDECIDVRKKDDQFSIQPIRRSFSLDSASDRKAYVDVQHIIQQNNRHQNEDCGINSEGCNYEDCNSSSNRGRRSFFPFRYGRV* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2887 324 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 323 - -
Mtr7g2887 324 Coils Coil 194 214 - -
Mtr7g2887 324 MobiDBLite consensus disorder prediction 190 225 - -
Mtr7g2887 324 SUPERFAMILY RING/U-box 88 148 - -
Mtr7g2887 324 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Mtr7g2887 324 MobiDBLite consensus disorder prediction 194 225 - -
Mtr7g2887 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 147 IPR013083 -
Mtr7g2887 324 Pfam Ring finger domain 100 142 IPR001841 -
Mtr7g2887 324 SMART ring_2 100 141 IPR001841 -
Mtr7g2887 324 PANTHER RING-H2 FINGER PROTEIN ATL16 3 323 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2887 Mtr-Chr7 45675115 45676429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2887 4 288 C3H Transcription Factor Family AT1G04360 42.384 3.06e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2887 K19041 - gmx:100809883 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2887 7 45675115 45676429 Mtr7g2887 7 45675115 45676429 ECH
Mtr7g2887 7 45675115 45676429 Mtr1g1375 1 16700304 16701821 PCT
Mtr1g2416 1 34726101 34727587 Mtr7g2887 7 45675115 45676429 PCT