Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2880 ATGGCTTCTTCAAATGGAACTAGCTCTGGAACCGGTTCTCCTTGTGGAGCATGCAAGTTCCTTAGAAGAAAATGTGCACCTGATTGCATTTTTGCACCTTACTTTTGCTCAGAACAAGGACCTGCAAGATTTGCAGCTATTCATAAAGTGTTTGGTGCTAGCAATGTTTCTAAGTTGCTCTTGCATATACCAGCTCATGAACGTTGTGAAGCTGTTGTCACAATTGCTTATGAGGCTCAAGCTCGTATCAGAGACCCTGTGTATGGTTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTAGCATGCTTGCAGGCACAATTGATGCAAGTGAAATCTCAGCTGTCACATAACATAGAGAATAATAATCAGTGGATAGGAAACAATAATAATGTTGCTGCCACACAAGCAATGAATTATCCATTTTGTCCAACTTATATGAACCCTATATCTCCTCAAAGCTCACTTGAGTCATCAATTGATCATAGCAGCAGCATGAATGATGGAATGATGAGCATGCAAGATGTACAAAGTAGCAGAGAAGATTTCTCATTCCAAGGTTGTAATAATTATAAGAAAAGAATGCCACATAACAATAATAATGATCATGACTTGGGTGAATTGCAAGAAATAGCAATTAGGATGATGAGGAACTAA 657 0.3881 MASSNGTSSGTGSPCGACKFLRRKCAPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKSQLSHNIENNNQWIGNNNNVAATQAMNYPFCPTYMNPISPQSSLESSIDHSSSMNDGMMSMQDVQSSREDFSFQGCNNYKKRMPHNNNNDHDLGELQEIAIRMMRN* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2880 218 Coils Coil 94 114 - -
Mtr7g2880 218 Pfam Lateral organ boundaries (LOB) domain 14 112 IPR004883 -
Mtr7g2880 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 217 - -
Mtr7g2880 218 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
Mtr7g2880 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2880 Mtr-Chr7 45599993 45601649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2880 1 218 AS2 family AT2G42430 54.032 1.01e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr7g2880 LOB 2e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2880 7 45599993 45601649 Mtr7g2880 7 45599993 45601649 ECH
Mtr7g2880 7 45599993 45601649 Mtr1g2426 1 34846686 34849569 PCT