Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2868 ATGTCGAGAATATGTGTGAAGAGTATCCCTAAATATTATACGGAGGATCATCTAAGACTAAAATTTTCTAAGATAGGAGAAATAACTGATGTCAAGCTTATGCGTACCATAACCGGAAAAAGTCGGCAATTTGCTTTTATTGGATTTCGTACCGACCGGGAAGCTCAGGAAGCAATTCGACATCTTAATAATTCTTACTTTGACACACAAAAAATTACTTGTGAGGTGGCTCAAAAACTTGGTGATGCAAATCTTCCTCGTCCGTGGAGTCAACATTCAACAAAAAAAGTCAATAAAGTGATCACCCCACATGTTAACAATCATGCTAGAGCTAAAGGACATGAAGACAATTCTATGGAAATTGATGACCCAAAACTTCAAGATTTTCTTCAGGTCATGCAACCTCGGGCAATGTCTAAGCTGTGGGCAAATGATACTTCAGTTGTATCCAATGATGGTAACAACCAAGCAACATTGAATAAGGAGACCGAAAGGACATCAGTTGCAAACCATCCTATCTTAAGCGACTCACAAGTAGATGAATTACCAAAAAACCCTAAATCCGATAAGAAACGTGAGCTTAAGCATGATGGAGTAATCTCTGATATGGATTATTTCAAGAGCAAATTAACAACGGAGTGGTCTGATTCTGAAAGCAGTGATGATGACAATGGCGATGACAACAGTGATTCGGCGTCTTCTGATGACGATGACAAAGATAAACCTAGTCATACTACTGAACATGAAGAAAATCGTGGTAATAACCCTGTTGAAAGAACCCCAAGAAGTGGTGCTCAAGAGTTAGATCTAGAAGACCAAGAAAATACTGTTGGAAAGGATGTAGCCAATGATAAGTCTCAAGTGAATGCAACTGAGGAAGAGGGGCAATTATCAAATCCAGAACATAAGAAAGGAGTTTCTGAGCCGTGTCGACTGTTTGTCCTTAATCTGCCATATTCGACCACTGAGGAGGAACTGGAAGAGCATTTCAGTCAGTTTGGCAGTGTCTCACAGGTTCATTTGCTTGTTCATGAGGTTACAAAACGATCCAAAGGAATAGCTTTTATTCATTTTTCAGTTCCAGAATTTGCAGCCAGGGCGCTAGAAGAGTCGAACAATTCAATCTTCCAGGGGAGATTATTGCGTGTTATACCAGCTAAAAGCAATGAAGAGAACAAGGACCAAGGCTCTAAAACTCACAAACAACGAAGAGAGGAAGAAAGGAAAGCAGCTGAAGCTAAAGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCCAGGATACAATTACAGAAAACGTTACTCGGAAACATGGTGTTAGTAAAAGTGATTTATTGGGTCCAGAAGCTGATGATGTTGCTGCAAATGTTGCTCTGGGAGAAACTGATGTGATTTTAGAAACAAAAAATGCATTTAAAAAGGCTGGAGTGAATGTGGAGTCTTTGGAGGAGCTTGCGGAGGGTAAAGTTTATGGCGTTAAAAGAAGTAACCATGTACTTTTAGCAAAAAATTTGCCATATGGTGCTACGGAAAATGAACTTGCAGAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCCTCGACAAGAACATTGGCCCTGGTTATTTTTCTCGAACCAGCAGAAGCTAAAGCTGCTTTTGGAGGTTTAGCTTACAAGAAATACAGGGCTGCTCCCTTATACTTGGAGTGGGCTCCTTCCGATGTTCTTAGCCCAAAATCACAATCTAAAAATGATGAGGTGAATAATGGAATATCTGAAAAGGATGTCAAGCGAGTGATATTAGAGAAAGATGTGGAAAAAATATCAGATGTTGATATTGATCCGGACAGAATAGAGGCTCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACAACAGATGAGGGTTTGAGGGAACATTTCAGTAAACACATGAAAGAGGGACGGATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAAAGGGAAAAATGTTTCTATGGGATTTGGATTTGTTGAGTTTGACTCTGCAGAGACTGCTACAAGTGTTTGCAACGATTTACAGGGGGCTGTTTTGGACAGTTATGCTCATATTTTACAACCTTGTCATGTCAAGAATGTTGGTAAAGTACAAAAGAAAGTTGAGAAAGACAAGAGTTCAACTAAGTTGCTTGTGAGAAATGTTGCTTTTGAGGCAACAAAGAAGGATCTGAGACAGTTATTTAGCCCATTTGGCCAGATTAAAAAATTAAAATTGCCAATGAAGTTTGGAAATCATAGAGGCTTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCACAAAATGCTCTTACAGCACTCTCAAGCACCCACTTGTATGGCAGACATCTGGTGATTGAGAGAGCAAAAGAAGGTGAGAGTTTGAAGGAACTGCGAGCTAGAACTGCTGCTCAATTTAATGAACATAGTGGATTTCAAGATACTAACTTATCCAAGAAAAGGAAGGCCATCAGTATGTTAGATGAAGGAAATATGAAATTTAAAAGGTTTGATTAG 2526 0.3939 MSRICVKSIPKYYTEDHLRLKFSKIGEITDVKLMRTITGKSRQFAFIGFRTDREAQEAIRHLNNSYFDTQKITCEVAQKLGDANLPRPWSQHSTKKVNKVITPHVNNHARAKGHEDNSMEIDDPKLQDFLQVMQPRAMSKLWANDTSVVSNDGNNQATLNKETERTSVANHPILSDSQVDELPKNPKSDKKRELKHDGVISDMDYFKSKLTTEWSDSESSDDDNGDDNSDSASSDDDDKDKPSHTTEHEENRGNNPVERTPRSGAQELDLEDQENTVGKDVANDKSQVNATEEEGQLSNPEHKKGVSEPCRLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEESNNSIFQGRLLRVIPAKSNEENKDQGSKTHKQRREEERKAAEAKGDTRAWNSLFMRQDTITENVTRKHGVSKSDLLGPEADDVAANVALGETDVILETKNAFKKAGVNVESLEELAEGKVYGVKRSNHVLLAKNLPYGATENELAEMFGKFGSLDKIILPSTRTLALVIFLEPAEAKAAFGGLAYKKYRAAPLYLEWAPSDVLSPKSQSKNDEVNNGISEKDVKRVILEKDVEKISDVDIDPDRIEARSLFVKNLNFKTTDEGLREHFSKHMKEGRILSVKVKKHLKKGKNVSMGFGFVEFDSAETATSVCNDLQGAVLDSYAHILQPCHVKNVGKVQKKVEKDKSSTKLLVRNVAFEATKKDLRQLFSPFGQIKKLKLPMKFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGESLKELRARTAAQFNEHSGFQDTNLSKKRKAISMLDEGNMKFKRFD* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2868 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 618 691 IPR000504 GO:0003723
Mtr7g2868 841 MobiDBLite consensus disorder prediction 217 233 - -
Mtr7g2868 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 570 IPR000504 GO:0003723
Mtr7g2868 841 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 819 - -
Mtr7g2868 841 SMART rrm1_1 619 699 IPR000504 GO:0003723
Mtr7g2868 841 SMART rrm1_1 499 566 IPR000504 GO:0003723
Mtr7g2868 841 SMART rrm1_1 311 384 IPR000504 GO:0003723
Mtr7g2868 841 SMART rrm1_1 719 790 IPR000504 GO:0003723
Mtr7g2868 841 SMART rrm1_1 3 75 IPR000504 GO:0003723
Mtr7g2868 841 Gene3D - 615 705 IPR012677 -
Mtr7g2868 841 SUPERFAMILY RNA-binding domain, RBD 606 696 IPR035979 GO:0003676
Mtr7g2868 841 SUPERFAMILY RNA-binding domain, RBD 3 82 IPR035979 GO:0003676
Mtr7g2868 841 CDD RRM3_RBM19_RRM2_MRD1 311 383 - -
Mtr7g2868 841 MobiDBLite consensus disorder prediction 147 174 - -
Mtr7g2868 841 MobiDBLite consensus disorder prediction 387 415 - -
Mtr7g2868 841 Gene3D - 492 595 IPR012677 -
Mtr7g2868 841 Gene3D - 708 817 IPR012677 -
Mtr7g2868 841 CDD RRM6_RBM19_RRM5_MRD1 718 792 - -
Mtr7g2868 841 Gene3D - 277 419 IPR012677 -
Mtr7g2868 841 Gene3D - 1 117 IPR012677 -
Mtr7g2868 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 388 IPR000504 GO:0003723
Mtr7g2868 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 718 794 IPR000504 GO:0003723
Mtr7g2868 841 SUPERFAMILY RNA-binding domain, RBD 495 583 IPR035979 GO:0003676
Mtr7g2868 841 SUPERFAMILY RNA-binding domain, RBD 713 797 IPR035979 GO:0003676
Mtr7g2868 841 MobiDBLite consensus disorder prediction 182 196 - -
Mtr7g2868 841 MobiDBLite consensus disorder prediction 264 279 - -
Mtr7g2868 841 MobiDBLite consensus disorder prediction 280 295 - -
Mtr7g2868 841 SMART rrm2_1 311 384 IPR003954 GO:0003676
Mtr7g2868 841 SMART rrm2_1 3 75 IPR003954 GO:0003676
Mtr7g2868 841 SMART rrm2_1 719 790 IPR003954 GO:0003676
Mtr7g2868 841 CDD RRM1_MRD1 2 77 - -
Mtr7g2868 841 SUPERFAMILY RNA-binding domain, RBD 303 397 IPR035979 GO:0003676
Mtr7g2868 841 CDD RRM4_RBM19_RRM3_MRD1 498 569 - -
Mtr7g2868 841 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 819 - -
Mtr7g2868 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Mtr7g2868 841 MobiDBLite consensus disorder prediction 147 196 - -
Mtr7g2868 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 503 558 IPR000504 GO:0003723
Mtr7g2868 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Mtr7g2868 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 620 691 IPR000504 GO:0003723
Mtr7g2868 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 381 IPR000504 GO:0003723
Mtr7g2868 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 720 787 IPR000504 GO:0003723
Mtr7g2868 841 MobiDBLite consensus disorder prediction 212 304 - -
Mtr7g2868 841 MobiDBLite consensus disorder prediction 234 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2868 Mtr-Chr7 45468898 45480836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2868 500 811 Eukaryotic Initiation Factors Gene Family AT1G49760 26.586 1.81e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2868 K14787 - gmx:100798742 1046.57