Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2792 ATGTCCAGGATATGCGTGAAGAATCTCCCTAAATATGTTGCAGAGGATCGACTAAAACAAGAATTTTCTAGGAAAGGAGAAATAACTGATGTCAAGCTTATGCGTACAAAAAACGGGAAAAGTCGCCAATTTGCTTTTATCGGATTTCGTACAGACCAGGAAGCTCAGGCAGCGATTAAATATTTTAATAAATCTTACCTTGACACGCAAGCAATTACTTGTGAGGTGGCTCAAAAACTTGGTGATGCAAATCTTCCTCGTCCGTGGAGTCGACATTCAACAAAAAAGGACGATAAAGTGATCACCACAGATGTTAGCAATCATGCTAGAGCTAAGGAACATGAAGACAATTCTATGGACATTGATGACCCAAAGCTTCAAGATTTTCTTCAGGTCATGCAACCTCGGGCAATGTCTAAGCTGTGGGCAAATGATACTTCAGTTGTATCCAATGATGGTAACAACCAACCAACACTGAATAAGGAGACCGAAAGTACATTAATTGCAAACCATCCTATCTTAAGCGACTCACATGTAGATGAGTTACCAAATAACCCTAAATCCGACAAGTCGCGTGATATTAAGCATGATGGAGTAATTTCTGATATGGATTATTTCAAGAGTAAAGTGACAACGGAGTGGTCTGATTCTGAAAGCAGTGATGATGACAGCAGTGATTCGGCGTCTTCTGACGACGATGACAAAGATAAACATAGTCATGCTACTGAACATGAAGAAAATCGTTGTAATAACCCTTCTGAAACAACCCCAAGAAGTGGTGCTCAAGAGTTAGATCTAGAAGACCAAAAAAATACCGTTGGAAAGGATGTTGCCAATGATAAGTCTCAAGTGAATGCAACTGAGGAAGAGGGGCAATTATCAAATCCAGAAGATAAGAAAGGAGTTTCTGAGCCGTGTCGACTGTTTGTCCGTAATCTGCCATATTCGACCACTGAGGAGGAATTGGAAGAGCATTTCAGTCAGTTTGGCAGTGTCTCACAGGCTCATTTGGTTGTTGATAAGGATACTAAACGATCCAAAGGAATAGCTTATATTCATTTTTCAGCTCCAGAGTTTGCAGCCAGGGCGCTAGAAGAGTCGGACAATTCAATCTTCCAGGGGAGATTATTGCATGTTATGCCAGCTATACCAAGACATTCAAACAATGAAGAGAACAAGGACCAAGGCTCTAAAACTCTCAAACAACGAAGAGATGAAGAAAGGAAAGCAGCTGAAGCTAAAGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAATTGTAGAAAACGCTGCTCGGAAACATGGTGTTAGTAAAAGTGATTTTCTGGATCCAGAAGCTGATGGTCTTGCTTCACGGTATTCTCTGGCAGAAACTGACGGGATTAAAGAAACAAAAAATGCATTTAGAAAAGCTGGAGTGAACGTGGAGTCTCTGGAGGAGCATGCGAAGGGTAAAGTTGATGGCAGGAAAAGAAGTAACCATGTACTTTTAGCGAAAAATTTGCCATATGGTGCTACGGAAAATGATCTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTGCCCTCGACAAAAACATTGGCCCTGGTTATTTTTCTCGAACCAGCAGAAGCTAAAGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCGTTATACTTGGAGTGGGCTCCTTCCGATATTCTTACCCCAAAATTAACATCTATAAATGATGAGGTGAATATTGTAATTGGTGAAAAGGATGTCAAGAGGGGGATATTAGAGAAAGACGTGGAAAGAATATCAGATGCTGATATTGATCCAGACAGAATAGAGGCTCGGTCCTTGTTTGTCAAGAACCTAAACTTCAAGACAACAGACGAGGTTTTGAGGGAACATTTCAGTGAACACATGAAGGAGGGGCGGATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGATTTGGATTTGTTGAGTTTGACTCCACAGAGACTGCTACGAGTGTTTGCAACGATTTACAGGGGACTGTTTTGGACGGTCATGCTCTTATTTTACAACTCTGTCATGTCAAGAATGATGATGATAAAGTACAAAAGAAAGTTGAGAAAGATAAGAGTTCAACCAAGTTACTTGTGAAAAATGTTGCCTTTGAGGCAACAGAGAAGGACCTGAGACAATTATTTAGCCCGTTTGGCCAGATTAAAAGTTTAAGATTACCAATGAAGTTTGGAAATCATAGAGGATTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCACAAAATGCACTTACAGCACTCTCAAGTACCCACTTGTATGGCAGACATCTGGTAATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAGGAACTGCGGGCTCGAACTGCTGCTCAATTTAATGAACATAGTGGATTTCAAGATACTAACTTATCCAAGAAAAGGAAGGGCATCAGTATGTTAGATGAAGGAAATATGAAGTTTGAAAGGTTTGATTAG 2529 0.4045 MSRICVKNLPKYVAEDRLKQEFSRKGEITDVKLMRTKNGKSRQFAFIGFRTDQEAQAAIKYFNKSYLDTQAITCEVAQKLGDANLPRPWSRHSTKKDDKVITTDVSNHARAKEHEDNSMDIDDPKLQDFLQVMQPRAMSKLWANDTSVVSNDGNNQPTLNKETESTLIANHPILSDSHVDELPNNPKSDKSRDIKHDGVISDMDYFKSKVTTEWSDSESSDDDSSDSASSDDDDKDKHSHATEHEENRCNNPSETTPRSGAQELDLEDQKNTVGKDVANDKSQVNATEEEGQLSNPEDKKGVSEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEESDNSIFQGRLLHVMPAIPRHSNNEENKDQGSKTLKQRRDEERKAAEAKGDTRAWNSLFMRPDTIVENAARKHGVSKSDFLDPEADGLASRYSLAETDGIKETKNAFRKAGVNVESLEEHAKGKVDGRKRSNHVLLAKNLPYGATENDLAKMFGKFGSLDKIILPSTKTLALVIFLEPAEAKAAFRGLAYKRYKDAPLYLEWAPSDILTPKLTSINDEVNIVIGEKDVKRGILEKDVERISDADIDPDRIEARSLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATSVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKVEKDKSSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGESLEELRARTAAQFNEHSGFQDTNLSKKRKGISMLDEGNMKFERFD* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2792 842 Gene3D - 490 585 IPR012677 -
Mtr7g2792 842 Gene3D - 710 817 IPR012677 -
Mtr7g2792 842 CDD RRM3_RBM19_RRM2_MRD1 307 380 - -
Mtr7g2792 842 MobiDBLite consensus disorder prediction 211 302 - -
Mtr7g2792 842 MobiDBLite consensus disorder prediction 230 251 - -
Mtr7g2792 842 CDD RRM6_RBM19_RRM5_MRD1 719 793 - -
Mtr7g2792 842 SUPERFAMILY RNA-binding domain, RBD 607 705 IPR035979 GO:0003676
Mtr7g2792 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 570 IPR000504 GO:0003723
Mtr7g2792 842 MobiDBLite consensus disorder prediction 276 291 - -
Mtr7g2792 842 CDD RRM5_RBM19_like 618 699 IPR034423 -
Mtr7g2792 842 Gene3D - 590 708 IPR012677 -
Mtr7g2792 842 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 820 - -
Mtr7g2792 842 MobiDBLite consensus disorder prediction 387 415 - -
Mtr7g2792 842 MobiDBLite consensus disorder prediction 261 275 - -
Mtr7g2792 842 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 820 - -
Mtr7g2792 842 SUPERFAMILY RNA-binding domain, RBD 495 572 IPR035979 GO:0003676
Mtr7g2792 842 MobiDBLite consensus disorder prediction 171 196 - -
Mtr7g2792 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 618 701 IPR000504 GO:0003723
Mtr7g2792 842 MobiDBLite consensus disorder prediction 182 196 - -
Mtr7g2792 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 378 IPR000504 GO:0003723
Mtr7g2792 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 620 694 IPR000504 GO:0003723
Mtr7g2792 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 503 561 IPR000504 GO:0003723
Mtr7g2792 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Mtr7g2792 842 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 721 788 IPR000504 GO:0003723
Mtr7g2792 842 Gene3D - 273 418 IPR012677 -
Mtr7g2792 842 MobiDBLite consensus disorder prediction 382 415 - -
Mtr7g2792 842 Gene3D - 2 98 IPR012677 -
Mtr7g2792 842 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Mtr7g2792 842 SMART rrm1_1 499 566 IPR000504 GO:0003723
Mtr7g2792 842 SMART rrm1_1 307 380 IPR000504 GO:0003723
Mtr7g2792 842 SMART rrm1_1 3 75 IPR000504 GO:0003723
Mtr7g2792 842 SMART rrm1_1 619 697 IPR000504 GO:0003723
Mtr7g2792 842 SMART rrm1_1 720 791 IPR000504 GO:0003723
Mtr7g2792 842 CDD RRM1_MRD1 2 77 - -
Mtr7g2792 842 SUPERFAMILY RNA-binding domain, RBD 299 393 IPR035979 GO:0003676
Mtr7g2792 842 CDD RRM4_RBM19_RRM3_MRD1 498 569 - -
Mtr7g2792 842 SMART rrm2_1 619 697 IPR003954 GO:0003676
Mtr7g2792 842 SMART rrm2_1 3 75 IPR003954 GO:0003676
Mtr7g2792 842 SMART rrm2_1 307 380 IPR003954 GO:0003676
Mtr7g2792 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 384 IPR000504 GO:0003723
Mtr7g2792 842 SUPERFAMILY RNA-binding domain, RBD 715 798 IPR035979 GO:0003676
Mtr7g2792 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Mtr7g2792 842 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 719 795 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2792 Mtr-Chr7 44603641 44613814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2792 611 802 Eukaryotic Initiation Factors Gene Family AT2G36660 30.928 1.44e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2792 K14787 - gmx:100798742 1129.01