Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2775 ATGAGGTGCATAGTTGATGAGCATCAAACCAATTCTTCAAAGCTGGAAGTGGATTCGACCGCCAACACGTCAAAACGTGCACATGCACGGGAGCCTGTTGATCCCGAAAAAGATGATGGTAAGAATAGCCCCATTCCTGTGGTGATTTCCAACCCTAAAGTGCTTGATTGCTACATTTGTTTTCAACCCTTAACCATTCCCGTCTTTCAGTGTGATAATGGTCATATTGCTTGCTCTACCTGCTATCCTAAACTTAGGAACACGTGTCCCAAGTGCTCATTGCGCATTAGCTCAAAACGTTGTAAAGCCATTGAGAATCTATTGCTATCTATTGAATTGTCATGTTCGAATGCAAAATACGGTTGCAGAGAGAAAATAAGTTACATTGGAAAGATGAACCATGAAGAACAATGCATCCATGAGCCGTGTTACTGCCCTCTGCCAGATTGTGACTTTGTTGCATCATCAGAAGTGTTGTCTAAGCATTTCAGCCATAAACACGGGGATTCTCAGACCAAGTTTTCTTATGGTCTGTCCGTTATTGTCTCCTTGAAGTCTAATGATGAAACTATTGTTCTTCAAGAGAATAATGTTGGCAAACTATTTATTCTCAATAATAGTACTATGCTTTTTGGAAATGCAATCAATATTTGTTGCATTAGTCCAAAGTCTTCTCAGTACGAGTGTGGTTATGATATATTGGCTAGATCTCAAGCATGCAAACCGAAATTTCAGTCGTTTGCGAAGAATGTGCAACGGTTTACTTTATCAACTCTTTCATTAGAGTTCCTTGTGATTCCATTTGGTTCTTCTGAACCTCTCGAGCTAGAAATTTGCATATCCCCCATGATGCTAATATACATATTGACCCTCACTAGAAAGAGGATCCCACTGAGGATTAAGAGTTCAGACACGATAGCCGATGTGAAGGAGAAGATTCTTGACAATGAAGGGATCCCAATGCATATGCAACGTCTGATCTTTGCCGGTAAGGAACTAGATAATAGCCTGACCCTTGCCAATTACCACATCCAAGAGAAGTCAACCCTCAAATTCGTCCTCCGCATCATGGGGGATTAG 1080 0.4102 MRCIVDEHQTNSSKLEVDSTANTSKRAHAREPVDPEKDDGKNSPIPVVISNPKVLDCYICFQPLTIPVFQCDNGHIACSTCYPKLRNTCPKCSLRISSKRCKAIENLLLSIELSCSNAKYGCREKISYIGKMNHEEQCIHEPCYCPLPDCDFVASSEVLSKHFSHKHGDSQTKFSYGLSVIVSLKSNDETIVLQENNVGKLFILNNSTMLFGNAINICCISPKSSQYECGYDILARSQACKPKFQSFAKNVQRFTLSTLSLEFLVIPFGSSEPLELEICISPMMLIYILTLTRKRIPLRIKSSDTIADVKEKILDNEGIPMHMQRLIFAGKELDNSLTLANYHIQEKSTLKFVLRIMGD* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2775 359 SUPERFAMILY Ubiquitin-like 268 358 IPR029071 -
Mtr7g2775 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 16 283 IPR044286 -
Mtr7g2775 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 16 283 - -
Mtr7g2775 359 ProSiteProfiles Zinc finger SIAH-type profile. 110 168 IPR013010 GO:0008270
Mtr7g2775 359 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Mtr7g2775 359 PRINTS Ubiquitin signature 294 314 IPR019956 -
Mtr7g2775 359 PRINTS Ubiquitin signature 315 335 IPR019956 -
Mtr7g2775 359 PRINTS Ubiquitin signature 336 357 IPR019956 -
Mtr7g2775 359 ProSiteProfiles Ubiquitin domain profile. 284 359 IPR000626 GO:0005515
Mtr7g2775 359 MobiDBLite consensus disorder prediction 1 45 - -
Mtr7g2775 359 Pfam Ubiquitin family 286 355 IPR000626 GO:0005515
Mtr7g2775 359 SMART ubq_7 284 355 IPR000626 GO:0005515
Mtr7g2775 359 MobiDBLite consensus disorder prediction 21 41 - -
Mtr7g2775 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 163 IPR013083 -
Mtr7g2775 359 Gene3D - 280 359 - -
Mtr7g2775 359 SUPERFAMILY RING/U-box 54 97 - -
Mtr7g2775 359 Pfam Seven in absentia protein family 100 176 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr7g2775 359 SUPERFAMILY TRAF domain-like 111 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2775 Mtr-Chr7 44441691 44445945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2775 284 358 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 58.667 1.13e-21 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2775 K04506 - gmx:100778869 237.654