Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2613 ATGGATCACTCCACTCTCTTCAATCTTCAGTCTTTGGTGAACTTTGAACTTCCAGAACAAGATGATGATTTTGAATATTATGGGAATAGTAGTCAGGATGAGAGCAGAATCACCAGAGGTGTGGCAATTGGAAGTCATAGTAATGGAAATGTGTCTGGAAGGGATGTGAATTTGTTGAAGAAGAGAAGTTGGTCTAGAAACAGTGATAACGAGGAAAAGAGTGGTTTTTATGAGACACCTGTGATGGAGGAACGATACCGATCAATGCTTGGAGACCATATTAAGAAATACAAGAGGAGGTTTAAGGGTAACTCTAGTAGTCCTGGCCCAAATCAGGTTCCCGTTCCTTTTTTGAAAAGTAATAATGGATTAAAAGCTCACAAGCCAGGGAATGAGCGCAACAGAGGATTGCATGATGATGAAACTTTATCTGAATGGATAAATGGTTCCAATGCTCAGAAATCAGGGAACTTCCTTGATACAGATTTCATACCTCAACATCGCACTAACAGGGTTAGGTATGAACCTGCATACGTGGATGTTGGGAATGGCATAGCTTATAAGATTCCTCCAATTTATGATAAGTTGGCACCACTTGTGAACCTTCCAAGCCTTTCAGATATCCACGTTGAGGACTTTTTCCTAAAGGGTACATTGGATCTGGGCTCCTTGGCTGAAATGATGGCATCTGATAAGAAGTTTGGAAATAGAAACCGAGTAGGCATGGGAGAAACTTTATCCCAATATGAATCACTTCAAGCACGTTTAAAGGACACGTCAGCTTCTAATTCCACCCACAAGTTCAGTTTGAAATTATCTGAGGCTGATTTGAATTCCTCCATTCCAGAGGGGGCAGCTGGAAGGATAAAGCGGTCTATTTTATCTGAGGGTGGTATATTGCAGGTTTACTATGTGAAGGTTTTGGAGAAAGGCGACACTTATGAGATCATTGAAAGAAGCTTACCCAAGAAACAAAAGGTAACAAAGGACGCTGCTTTAATAGAGAAAGAGGAAATGGAAAAATTGGGAAAGATTTGGGTAAACATTGTAAGAAGAGATCTACCAAGACATCATCGGAATTTTACTACTTTTCACCGAAAGCAGGTCATTGATGCAAAGAGGGCCGCAGATATTTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCGCTTAAATGGACGAGAACTGCTAGCATGCGCACCCGAAAACTAGCTAGAGACATGCTACTATTCTGGAAACGAATAGATAAGGAGATGTTAGAAATTAGGAAAAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAGCAAGAGCTTCGAGAAGCAAAAAGGCAGCAGCAAAGACTAAATTTTCTTATACAGCAGACTGAGCTGTACAGCCACTTTATGCAAAACAAGTCAATAGCTTCAGAAGCTCTATCCATGGCAGACGAAAATACAAATGATGAAAATGCGCTGATCAACTCTTCAGCTGCTGATCCTAACGAGGAGGAAGATCCTGAAGAGGCTGAATTAAAGAAGGAAGCTTTAAAGGCTGCTCAAGAAGCAGTTTCTAAGCAGAAAATGTTGACAAGTGCTTTTGACACTGAATGCTTGAAGCTGCGCCAGGCTGGTGAATCTGATTCACTTCAACCAGAAGTTTCTGGAGCAAGCAATATTGACTTGAAGACCCCCTCCACCATGCCTGTGGCATCCACAGTTCGGACACCTGAATTATTCAATGGCTGTCTCAAAGATTATCAGCTAAAAGGTCTTCAGTGGCTTGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTTGCTGATGAGATGGGACTTGGAAAGACCATTCAGGCTATGGTTTTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGACCTTTTTTGATTGTTGCACCCGCTTCTGTATTAAATAATTGGAATGAGGAGCTTGAGCGCTTCTGCCCTGAACTTAAAGTACTTCCTTATTGGGGTGGGCTTTCAGAGCGGACAGTGCTCAGGAAAAGTATGAACCCAAAGGATCTTTATCGCAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTGTTAGTCTCTGATGAGAAGTATTTCCGGCGTGTGAAATGGCAGTATATGGTTTTAGACGAAGCTCAGGCAATTAAAAGTTCCAACAGTATACGATGGAAGACACTCCTCAGCTTTAACTGTCGGAATCGCCTACTGCTGACTGGTACACCCGTTCAGAATAATATGGCTGAGTTATGGGCTCTTCTTCACTTCATTATGCCAACTTTATTTGATAGCCATGAACAGTTCAATGAGTGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAATCGATTGCATTCAATTATAAAGCCTTTCATGTTGCGTCGTGTTAAAAAAGATGTAGTTTCTGAGCTGACTAGCAAAACTGAAATTACCGTGCACTGCAAGTTAAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAATCGGGGACAGCTCAATGAGAAGAAAATCCTGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAAGGAAGCACGTACCTTTACTTTGGAGAGATTCCAAATTCCCTTCCTCCTCCTCCATTTGGGGAGTTAGAGAATGTATACTATTCTGGTGGGCACAACCCCATCTCATATCAGATACCGAAACTTGTCTATCAAGAAATTATGCGGAGTTCTGAAACTCTCAATTCAGCTGTTAGTCATGGTTTCTGCAGAGGATCTTTTCCGAAGTATTTTAATATTTTTAGACCAGAAAATGTTTATCAATCTGTCTTTTCAGAAGATATGCATGTTAAAAGTGGAACCTTTGGGTTTACCCATTTGATGGATTTATCTCCACAAGAGGCGGCATTTCTGGTTAATGGTTCTTTTATGGAGAGACTACTATTTTCTATGATGAGATGGGACCAGAAATTCATTGATGAAGTTGTAGACTTTCTTACAGAGACCACAGATGATGATCTGGAATGTAGTTCCCTTGAAAAAGGAAAAGTGAGAACCGTCACACGAATGTTATTGGTGCCATCAAGATCTGAGACTAAGTTTCTTCAGAACAGATTACCAACTGGACCCAGCCATGCTCCTTTTGAGGCCTTGGTTGTGCCGCATCAGGAGAGGCTTTTCTCAAATGCAAGGCTTCTTCACTCAGCTTACTCATATATCCCACCAAGTAGAGCACCCCCAATCGGTGCTCACTGTTCTGATAGGAACTTTTACTATAAAATGATTGAGGAACTACATGATCCATGGGTTAAGAGGTTGTTTGTGGGATTTGCACGTACGTCTGATTTTAATGGTCCTAGCAAGCCAGCTGGTTCTCATCATTTAATTCAAGAGATCGACTCTGAACAACCTGTTTATAAGCCTGCTCTTCAGTTAACACACAGTATTTTTGGGTCTTCTCCACCTATGCGAAATTTCGACCCAGCAAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGAGCCGGAAATCATCGTGTTTTGTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAGTATAAGTATTGTAGACTTGATGGATCAACATCTATTCAGGACCGCAGAGATATGGTCAGAGACTTTCAGCATAGGTCTGATATTTTCGTGTTCTTACTGAGTACAAGAGCCGGTGGATTGGGTATTAACTTGACAGCTGCTGACACGGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCGATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACCGTTTACCGACTTATATGTAAAGAGACAGTCGAAGAGAAGATTCTTCTAAGAGCTAGTCAGAAAAGTACAGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTCGTATCTTTGCTTCTGGATGATGTTCAGTTGCAGCAGAAATTTAAAGATATAGCTCAGGTAAGGGATAAGCAAAAGAAAAAACAACCTATGAAGGGTATATTGGTGAATGAAGATGGCGATGCATCTCTGGAAGATGTATCAAACTCTGTAGCCCTGGCTACAACAGATTCTGATCTTGCAGTCGACCCAGAGGGATCAAAGTCCAGTAATAAAAAGAGAAAATCTGCCTCGGATAAAAAAACTTTGAGGCCAAAAAATTCTCAAAAGACTAGTGAATTTGATGCCATGCCTATGGACAACGAGTTGGATGATACTGATCCAGTGGTTCAGAAACCCAAGAGACCAAAGAGAATAAAGAAGAATGTGAATGAAATGTTTGAAGAGGCTCGTACAGGGACAGCTACCATGGTCCCAGGGCAGACACAATATCAACCTCCACATGATGGAGGTTCCAAAATAGAATCAGGCCAAGGCACCTAA 4545 0.4112 MDHSTLFNLQSLVNFELPEQDDDFEYYGNSSQDESRITRGVAIGSHSNGNVSGRDVNLLKKRSWSRNSDNEEKSGFYETPVMEERYRSMLGDHIKKYKRRFKGNSSSPGPNQVPVPFLKSNNGLKAHKPGNERNRGLHDDETLSEWINGSNAQKSGNFLDTDFIPQHRTNRVRYEPAYVDVGNGIAYKIPPIYDKLAPLVNLPSLSDIHVEDFFLKGTLDLGSLAEMMASDKKFGNRNRVGMGETLSQYESLQARLKDTSASNSTHKFSLKLSEADLNSSIPEGAAGRIKRSILSEGGILQVYYVKVLEKGDTYEIIERSLPKKQKVTKDAALIEKEEMEKLGKIWVNIVRRDLPRHHRNFTTFHRKQVIDAKRAADICQREVKMKVSRSLKWTRTASMRTRKLARDMLLFWKRIDKEMLEIRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSIASEALSMADENTNDENALINSSAADPNEEEDPEEAELKKEALKAAQEAVSKQKMLTSAFDTECLKLRQAGESDSLQPEVSGASNIDLKTPSTMPVASTVRTPELFNGCLKDYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLIVAPASVLNNWNEELERFCPELKVLPYWGGLSERTVLRKSMNPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSIIKPFMLRRVKKDVVSELTSKTEITVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGELENVYYSGGHNPISYQIPKLVYQEIMRSSETLNSAVSHGFCRGSFPKYFNIFRPENVYQSVFSEDMHVKSGTFGFTHLMDLSPQEAAFLVNGSFMERLLFSMMRWDQKFIDEVVDFLTETTDDDLECSSLEKGKVRTVTRMLLVPSRSETKFLQNRLPTGPSHAPFEALVVPHQERLFSNARLLHSAYSYIPPSRAPPIGAHCSDRNFYYKMIEELHDPWVKRLFVGFARTSDFNGPSKPAGSHHLIQEIDSEQPVYKPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYCRLDGSTSIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKDIAQVRDKQKKKQPMKGILVNEDGDASLEDVSNSVALATTDSDLAVDPEGSKSSNKKRKSASDKKTLRPKNSQKTSEFDAMPMDNELDDTDPVVQKPKRPKRIKKNVNEMFEEARTGTATMVPGQTQYQPPHDGGSKIESGQGT* 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2613 1514 PANTHER CHROMATIN-REMODELING ATPASE INO80 7 1472 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Mtr7g2613 1514 PANTHER HELICASE SRCAP-RELATED 7 1472 - -
Mtr7g2613 1514 SMART ultradead3 574 769 IPR014001 -
Mtr7g2613 1514 Gene3D - 1163 1412 IPR027417 -
Mtr7g2613 1514 Pfam SNF2-related domain 593 880 IPR000330 GO:0005524|GO:0140658
Mtr7g2613 1514 ProSiteProfiles DBINO domain profile. 345 470 IPR020838 GO:0003677
Mtr7g2613 1514 Coils Coil 417 456 - -
Mtr7g2613 1514 SMART helicmild6 1222 1305 IPR001650 -
Mtr7g2613 1514 MobiDBLite consensus disorder prediction 1409 1514 - -
Mtr7g2613 1514 Pfam DNA-binding domain 340 468 IPR020838 GO:0003677
Mtr7g2613 1514 Gene3D - 574 815 IPR038718 -
Mtr7g2613 1514 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 590 761 IPR014001 -
Mtr7g2613 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 808 1363 IPR027417 -
Mtr7g2613 1514 Gene3D - 816 885 IPR027417 -
Mtr7g2613 1514 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1196 1346 IPR001650 -
Mtr7g2613 1514 MobiDBLite consensus disorder prediction 1489 1514 - -
Mtr7g2613 1514 Pfam Helicase conserved C-terminal domain 1196 1305 IPR001650 -
Mtr7g2613 1514 CDD SF2_C_SNF 1184 1316 - -
Mtr7g2613 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 806 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2613 Mtr-Chr7 42748574 42761305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2613 599 888 RAD5 or RAD16-like Gene Family AT5G43530 29.167 6.36e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr7g2613 SNF2_N 4.6e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2613 K11665 - gmx:100780615 2451.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2613 7 42748574 42761305 Mtr7g2613 7 42748574 42761305 ECH