Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2533 ATGCTAACCCTAACCTCCATATTTGAGAGTGCCACTACTGGTGTTGGAAAAAGGAGTGGGATGGAGATGGACTCTTTTTTTGGGATGAATTTTAAGTACAGTGGGAGTGTCTCTTCTTCCACGAAAAGGAAGAGAAAATTTCCTTTTCCTTCGGATCGACAAAAGGAGCGTTATGAAGACTGGGATGCACTAATCCTTACCACCCATCATGTGTTAAAACGGGAGAAAGTCTTGGTTCAAGCCAAGGAAAACTTGAATTCTGGTACCGGAGAAGACAAAATAAGTGCGCTACCTGATTCACTTCTTTATTATATTCTTTCCTTTATTTCGATTAAAGATGCCGCCACCACAAGTATCCTCTCAAAGAGGTCGAGACCACTTTGGCTCTCACAACTCTTCCTCAACTTGGATGACGAACCATTTCCAGACTCACTGACCTTTTGCAATTTTGGATATTCACTCATGGCCATGCGAGATATCACTCTACCCATCCTCTCTTTCCATCTTGAATGTTGGAACTACTACGATTGCAGGGATATCTCCGAGGATATCTACAAATTTGTTAATATAGCAATTCAAAGAGGAGTTGAGAACCTCAACATTGACTTCTCTAGCTCTCACTCACTTTTCTCCCGGATGGCGCTGCCATCTTTTGTTTTTAGTAGCAAAACATTGTCAATCCTTAAATTGAAACAGATAACCTTAAATGAAGTTACATGCGTTAATCTTCCATCTCTCAAAGCCCTTTACTTGGACGTTGTCACTTTCACATATTATGAATATATTTTGAAGCTTTTATCAGGATGTCCCATTCTACAAGATTTGGGAGCAAATGATTTACGAGTAGAGTTACCTTATTCAGAGGGACGAGTTATAAGTTTGTCCAATTTGATCAGAGCAAATATCTGTGACATTCATATTGAGTTTGATTGGCTTCAAAACGTAGAGCGTCTGCGTGCAACCGTGCTCATGGAGAAGCTTCCCTATACATTTGAACGCATTGCCATGTTTCACAATTTAACATACTTGGAGCTTATCATCAATTATCAACATTTTCCAAGGGCATGGATGTTTAATGGTATGATAAGTTGCTTGAATATTGTCCCAAACTTTAAAGTCTTATCATTGATGAGTTTGTGTTTTGTAAAATTTGCTGCATTAGTGGAAACGGGATCTACTTCTTCTGTCCAAGAGGAGGTTGATCACATAAATGAAAACAGTGATGAAAATTTAGAAGCAAATATTGTTCAAGCAGATGAGGAACCTAGGATTGGGATGACATTTAGTTCTGAAGAAGAAGTTATCAAATATTACAAGAGCTATGCTAGATGTATGGGTTTTGGAACTGTTAAAATCAATTCAAAAAATGCAAAGGATGGAAAAAAATACTTTACTCTAGGATGTACTCGTGCAAGAAGCTATGTGAGTAACTCAAAGAACCTTTTGAAACCAAATCCTACCATAAGAGCACAGTGTATGGCTAGAGTAAATATGTCTATGTCTTTAGATGGAAAAATTACAATTACAAAAGTTGCTCTTGAGCATAATCATGGATTAAGCCCGACAAAATCTAGATATTTTAGATGCAATAAGAATTTGGACCCTCATACAAAAAGGAGGTTAGATATTAATGATCAAGCTGGTATTAATGTAAGCAGAAATTTCCGATCTATGGTTGTTGAAGCAAATGGATATGATAATCTTACATTTGGAGAAAAAGATTGTAGAAATTACATTGACAAAGCAAGACGGCTTCGACTTGGGACAGGAGATGCTGAAGCTATTCAAAACTATTTTGTCAGAATGCAAAAGAAAAATAGTCAATTTTATTATGTGATGGATGTGGATGACAAAAGTCGTTTGCGAAATGTATTCTGGGTAGATGCGAGATGTAGGGCTGCTTATGAGTATTTTGGTGAAGTCATAACTTTTGATACCACTTATTTAACAAATAAGTATGACATGCCTTTTGCCCCTTTTGTTGGAGTCAATCATCACGGTCAATCAGTTTTGTTAGGTTGTGCCCTATTGTCGAATGAGGATACGAAAACCTTTTCCTGGTTGTTCAAAACATGGTTAGAATGCATGCATGGACGTGCACCAAATGCCATAATTACTGACCAAGATAGAGCAATGAAGAAGGCAATTGAGGACGTCTTTCCAAAAGCTCGTCATCGATGGTGTTTGTGGCATTTAATGAAAAAGGTTCCGGAAAAGTTGGGTAGACATTCTCATTATGAGTCTATCAAATTACTTTTGCATGATGCTGTGTATGATTCTTCGAGCATATCTGATTTCATGGAGAAGTGGAAAAAAATGATTGAATGTTACGAACTGCATGATAATGAATGGTTGAAAGGGCTATTTGATGAGAGATATCGTTGGGTTCCTGTGTATGTTAGAGACACATTTTGGGCTGGAATGTCAACTACACAACGAAGTGAAAGTATGAATTCATTCTTTGATGGGTATGTGAGCTCAAAGACAACATTGAAGCAATTTGTTGAACAATATGACAATGCGTTGAAAGATAAAATTGAAAAGGAAAGCATGGCTGATTTTGTTTCATTTAATACAACAATTGCTTGTATTAGTCTTTTTGGCTTTGAGTCTCAATTCCAAAAAGCATTTACCAATGCAAAATTCAAAGAATTTCAAATTGAAATTGCTTCTATGATTTACTGTAATGCTTTCTTAGAGGGAATGGAGAATTTGAATTCAACATTTTGCGTTATAGAAAGTAAAAAGGTATATGATAGATTTAAAGACACAAGGTTCAGGGTAATCTTCAATGAGAAAGACTTCGAAATACAATGTGCTTGCTGCTTATTTGAGTTTAAAGGCATTTTATGCAGACATATCCTTTGTGTTCTTCAGCTCACAGGTAAAACTGAGTCAGTACCGTCTTGTTATATTTTGTCAAGGTGGAGGAAGGATATTAAGCGGAGACACACACTTATTAAATGTGGGTTTGATGGAAATGTTGAATTGCAACTAGTTGGTAAGGCATGTGATGCCTTTTACGAAGTTGTTTCTGTGGGGATACATACTGAAGATGATTTATTGAAAGTGATGAATCGGATCAACGAATTGAAAATTGAATTAAACTGTGAAGGAAGTTCTTCTGTCATTATAGAAGAAGACAGTTTAGTTCAAAATCAGATGGCTAAAATTCTTGATCCTGCAACAACTCGAAGTAAAGGACGTCCTCCCTCAAAAAGGAAAGCTTCTAAACTTGATCAAATTGTGCAAAAGAAGGTTTTAAGAAAGAAAACTCAAAATAGAAACAATAAGAGTAACAATTATCTTAGCCAAGAAGAGGGTCTGTGTCTATCTAGACTTCAAGAAACTGAAAAAGCTGAGTTTTCTACATCTCAAATCATTGATGGGATTGGCACACAACAGAGAATTCAAGCAAATTTAGCTCCCTTCAATCCAAATCAAAAATATTTTGTTGAAGTAAATCAGGTCCCATACTATTCTCAAAGCATAAATCATAATATTACATGTTCAGAACTTTTAGAGGCACAACACCATATGATTGATAAACCATCAGAATGA 3561 0.3625 MLTLTSIFESATTGVGKRSGMEMDSFFGMNFKYSGSVSSSTKRKRKFPFPSDRQKERYEDWDALILTTHHVLKREKVLVQAKENLNSGTGEDKISALPDSLLYYILSFISIKDAATTSILSKRSRPLWLSQLFLNLDDEPFPDSLTFCNFGYSLMAMRDITLPILSFHLECWNYYDCRDISEDIYKFVNIAIQRGVENLNIDFSSSHSLFSRMALPSFVFSSKTLSILKLKQITLNEVTCVNLPSLKALYLDVVTFTYYEYILKLLSGCPILQDLGANDLRVELPYSEGRVISLSNLIRANICDIHIEFDWLQNVERLRATVLMEKLPYTFERIAMFHNLTYLELIINYQHFPRAWMFNGMISCLNIVPNFKVLSLMSLCFVKFAALVETGSTSSVQEEVDHINENSDENLEANIVQADEEPRIGMTFSSEEEVIKYYKSYARCMGFGTVKINSKNAKDGKKYFTLGCTRARSYVSNSKNLLKPNPTIRAQCMARVNMSMSLDGKITITKVALEHNHGLSPTKSRYFRCNKNLDPHTKRRLDINDQAGINVSRNFRSMVVEANGYDNLTFGEKDCRNYIDKARRLRLGTGDAEAIQNYFVRMQKKNSQFYYVMDVDDKSRLRNVFWVDARCRAAYEYFGEVITFDTTYLTNKYDMPFAPFVGVNHHGQSVLLGCALLSNEDTKTFSWLFKTWLECMHGRAPNAIITDQDRAMKKAIEDVFPKARHRWCLWHLMKKVPEKLGRHSHYESIKLLLHDAVYDSSSISDFMEKWKKMIECYELHDNEWLKGLFDERYRWVPVYVRDTFWAGMSTTQRSESMNSFFDGYVSSKTTLKQFVEQYDNALKDKIEKESMADFVSFNTTIACISLFGFESQFQKAFTNAKFKEFQIEIASMIYCNAFLEGMENLNSTFCVIESKKVYDRFKDTRFRVIFNEKDFEIQCACCLFEFKGILCRHILCVLQLTGKTESVPSCYILSRWRKDIKRRHTLIKCGFDGNVELQLVGKACDAFYEVVSVGIHTEDDLLKVMNRINELKIELNCEGSSSVIIEEDSLVQNQMAKILDPATTRSKGRPPSKRKASKLDQIVQKKVLRKKTQNRNNKSNNYLSQEEGLCLSRLQETEKAEFSTSQIIDGIGTQQRIQANLAPFNPNQKYFVEVNQVPYYSQSINHNITCSELLEAQHHMIDKPSE* 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2533 1186 Pfam SWIM zinc finger 933 959 IPR007527 GO:0008270
Mtr7g2533 1186 ProSiteProfiles F-box domain profile. 91 136 IPR001810 GO:0005515
Mtr7g2533 1186 SMART 26again6 937 964 IPR006564 GO:0008270
Mtr7g2533 1186 Pfam FAR1 DNA-binding domain 436 520 IPR004330 -
Mtr7g2533 1186 Pfam MULE transposase domain 641 735 IPR018289 -
Mtr7g2533 1186 ProSiteProfiles Zinc finger SWIM-type profile. 926 962 IPR007527 GO:0008270
Mtr7g2533 1186 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 394 1033 IPR031052 GO:0006355
Mtr7g2533 1186 PANTHER OS03G0843700 PROTEIN 394 1033 - -
Mtr7g2533 1186 SUPERFAMILY F-box domain 85 144 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2533 Mtr-Chr7 41933222 41938368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2533 79 303 EF-hand Containing Proteins AT5G41840 33.198 2.34e-19 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr7g2533 MULE 3.8e-36 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2533 - - cam:101506732 1042.72