Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2522 ATGGAAGACTCACAAGAACCCTTCTCTCAATCCCAATCCGAAACCTACCTCGCCGGTTTCGTAATGGCCAACATCGTCGGCATTAAACACTACTCCGGCACCATCACCGGTCGCGAAATCCTCGGCTTAATCCGCGAACCTTTAAACCCATACGATTCCAACGCCATCAAAGTCCTCAACACTCAAACGCTCCAAGTCGGTTACATCGAACGCGCCGTTGCCTCCGCTCTCGCTCCTCTCCTCGACGCTCACATCATCCACGTCGAAGCCATCGTTCAACCCCGCTCTAACAATAACAAATTCCGTATCCCTTGTCAGATTCATATCTTCGCTCATCAATCTTCTTTTGATGCTGTTCATGACGCTTTTAACGGTTCCAATGTTCATTTCATTTCGTATAGCGATCCTTCGTTTACTCTTTCTCATTCCGCCGCCGTTAAAGAAACACGCGCCGACACCTTCAACTCTGATTCTGTAACCACCGGTAATAATAATAGTAAAAACCTAGATCAAATTTTCAAACTCGTTCGAGAAAACCTAGCTTCCAAAACCCTAGTTTCTGAACCGTTAAACCCTCCTTCTAGCATTATCAAATCAGAGCTTCTGCAGCACCAAAAAGAAGCACTGGGATGGCTTTATCATCGCGAAAGTACCCAAGATTTACCGCCGTTTTGGGAGGAGAAAGTGGGGAATTTCGTCAATGTGTTGACGAATTATCAAACTAATGCGCGACCGGAGCCTCTTCGGGGAGGGATATTCGCAGATGGGATGGGATTAGGGAAGACTTTAACTTTGTTATCTTTGATTAGTTATGATAAAATGAAAATGAAAAGTGGGAAGAAAAGAGGTAGGAGTAGTGTAGAGAGGGTGGAGAGTGAGACAAATGGTACATTGATTGTGTGTCCTCCTTCTGTGATTTCGACGTGGATAACTCAGTTGGAGGAACATACTAACCGCGGCACGTTGAAGGTTTATATGTACTATGGTGATAGGAGGACTCAAGATGCTGAGGAGTTGAGGAAATATGATATTGTGTTGACTACTTATGCTACATTGGGAGCCGAGTTGCGGTGTTCAGATACTCCTGTGAAGAAATTGGGGTGGAGGAGGATTGTTTTGGATGAGGCGCATACAATTAAGAATGTTAATGCGGGACAGAGTCAGGCTGTTATTGCTTTGAATGCTAAGAGGAGATGGGCTGTTACGGGGACGCCTATTCAGAATGGTTCTTATGATTTGTTTTCTCTTATGGCTTTTTTGCATTTTGAGCCGTTTTCTATTAAGAGTTATTGGCAAAGCTTGGTTCAGCGACCTCTTAATCAAGGAAAACAGACTGGGATGAGTCGATTGCAGGTTTTGATGTCGGCGATATCATTGCGAAGAACCAAAGACACTGCATTGGGGGGGCTTCCACCTAAGATTGTTGAGACTTGTTATGTTGAACTTTCATTTGAAGAACGTAAACTGTATGATGAGGTTAAAGAGGAAATAAAGTCGCTTATGATGCATCATAACAGCAATGACAGACTAGTATCTAGTTATTCCACTGTACTAAGTATGATTCTAAGACTTCGTCAGATCTGTGCTGATTTTTCGATGGTTCCTTTGGATTTCAAGTCCTGTCTATTTTCTTCAACTGATATTGAAGATGTTTCCAAGAACCCTGAATTGCTGCAAACATTAATTAGGATGCTACAGGATGGTGAAGATTTTGATTGTCCAATTTGTTTATCTCCCCCAACAGATATTGTAATTACATGTTGTGCTCATATTTTCTGCCGAGAATGTATTCTGAAAACTCTTCAACGCAGCAATTCCAGCTGTCCACTTTGTCGGCGCTCCCTCTCAGAAACGGAGTTATTCTCAGCTCCCCCTGAATCTTTCAAGACCGATGATACTGATGTTACTACTGAGCTGTGCACAGCTGAAGTAAGGTCATCTACCAAAGTCTCTACTTTGATAAAGCTTCTTACAGAATCGAGGGATCAAAATCCAGCTACAAAATCAGTTGTATTTTCACAATTCCGTAAGATGCTGCTGTTGTTAGAAGAACCTTTAAAAGCAGCTGGCTTTAAAACATTGCGTCTTGATGGGACAATGAATGCCAAACAAAGGGCTCAAGTTATTGAACAATTTCAACTCTCGGAAGTTGATGAGCCAATGATTCTGCTTGCAAGTCTCAGAGCTTCAAGTACAGGAATAAATCTTACTGCTGCCTCCAGAGTGTACTTAATGGAGCCATGGTGGAACCCTGCTGTTGAAGAACAAGCAATGGATCGTGTCCACCGCATTGGACAGAAAGAAGAAGTGAAAATTGTTAGACTGATTGCAAAAAACAGCATTGAAGAGAAAATACTAATGTTGCAAGAGAAGAAGAAGAAAACGATAACAAGCCGAGGATCTGGAAGAAGATCAAGGGATATCGCTGGTATGGGCATAGAGGATCTCCATTTTGTTTTAGGAGAATAG 2469 0.4253 MEDSQEPFSQSQSETYLAGFVMANIVGIKHYSGTITGREILGLIREPLNPYDSNAIKVLNTQTLQVGYIERAVASALAPLLDAHIIHVEAIVQPRSNNNKFRIPCQIHIFAHQSSFDAVHDAFNGSNVHFISYSDPSFTLSHSAAVKETRADTFNSDSVTTGNNNSKNLDQIFKLVRENLASKTLVSEPLNPPSSIIKSELLQHQKEALGWLYHRESTQDLPPFWEEKVGNFVNVLTNYQTNARPEPLRGGIFADGMGLGKTLTLLSLISYDKMKMKSGKKRGRSSVERVESETNGTLIVCPPSVISTWITQLEEHTNRGTLKVYMYYGDRRTQDAEELRKYDIVLTTYATLGAELRCSDTPVKKLGWRRIVLDEAHTIKNVNAGQSQAVIALNAKRRWAVTGTPIQNGSYDLFSLMAFLHFEPFSIKSYWQSLVQRPLNQGKQTGMSRLQVLMSAISLRRTKDTALGGLPPKIVETCYVELSFEERKLYDEVKEEIKSLMMHHNSNDRLVSSYSTVLSMILRLRQICADFSMVPLDFKSCLFSSTDIEDVSKNPELLQTLIRMLQDGEDFDCPICLSPPTDIVITCCAHIFCRECILKTLQRSNSSCPLCRRSLSETELFSAPPESFKTDDTDVTTELCTAEVRSSTKVSTLIKLLTESRDQNPATKSVVFSQFRKMLLLLEEPLKAAGFKTLRLDGTMNAKQRAQVIEQFQLSEVDEPMILLASLRASSTGINLTAASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEEKILMLQEKKKKTITSRGSGRRSRDIAGMGIEDLHFVLGE* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2522 822 Pfam HIRAN domain 21 110 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mtr7g2522 822 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 275 796 - -
Mtr7g2522 822 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 9 269 - -
Mtr7g2522 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 461 IPR027417 -
Mtr7g2522 822 Pfam Zinc finger, C3HC4 type (RING finger) 570 616 - -
Mtr7g2522 822 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 9 269 - -
Mtr7g2522 822 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 275 796 - -
Mtr7g2522 822 SUPERFAMILY RING/U-box 558 617 - -
Mtr7g2522 822 SMART helicmild6 680 765 IPR001650 -
Mtr7g2522 822 SMART ring_2 573 611 IPR001841 -
Mtr7g2522 822 Gene3D - 471 811 IPR027417 -
Mtr7g2522 822 CDD RING-HC_HLTF 572 612 - -
Mtr7g2522 822 CDD SF2_C_SNF 647 776 - -
Mtr7g2522 822 ProSiteProfiles Zinc finger RING-type profile. 573 612 IPR001841 -
Mtr7g2522 822 Pfam SNF2-related domain 204 533 IPR000330 GO:0005524|GO:0140658
Mtr7g2522 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 803 IPR027417 -
Mtr7g2522 822 ProSitePatterns Zinc finger RING-type signature. 588 597 IPR017907 -
Mtr7g2522 822 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 652 817 IPR001650 -
Mtr7g2522 822 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 559 626 IPR013083 -
Mtr7g2522 822 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 242 423 IPR014001 -
Mtr7g2522 822 Gene3D - 9 129 - -
Mtr7g2522 822 Gene3D - 230 462 IPR038718 -
Mtr7g2522 822 SMART HIRAN_2 18 113 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mtr7g2522 822 Pfam Helicase conserved C-terminal domain 649 765 IPR001650 -
Mtr7g2522 822 SMART ultradead3 197 430 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2522 Mtr-Chr7 41767845 41772380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2522 1 816 RAD5 or RAD16-like Gene Family AT5G05130 57.981 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr7g2522 SNF2_N 1.8e-76 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2522 K15711 - vvi:100263696 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2522 7 41767845 41772380 Mtr7g2522 7 41767845 41772380 ECH