Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2461 ATGGTGAGAAAGAGAAAACTCGTTAAAGCTTCTCAACAAGAAGAACCACCGCTCAAACAGCATCAACCGGAGCCTAAACCGGAACCGGTACCCGAACCCGAACCTGAACCATACATCCCGGGCGAAGAATACGAAGAGGTTGAAGAAGAAGTTGAATACGAAGAAGTTGAAGAGGAAGTAGAGGAGGAGGAAGAGGAGGAAGAAGAGGAAGAAGAAGAGGAACAACAAATTCAAGTAGAAGAAGACGATGAACCGATCCAGAAGCTTCTAGAACCTTTCTCAAAAGAACAGATCTCGAGTCTTCTTTGCGAAGCGGCTTCGAAGCATCGTGACGTTGCGGATCGGATTCGGAAGATTGCTGATGGTGATGCTTCTCATCGGAAAATATTTGTTCATGGTTTGGGATGGGATACTACTTCAGCAACGCTGATTAATGCCTTTTCGCAGTACGGTGAAATTGAGGATTGTAAAGCTGTTACGGATAAGGTTTCAGGGAAATCTAAGGGTTATGGATTTATTTTGTTCAAGAGAAGGAGTGGAGCGAGGAATGCGTTGAAGGAGCCGCAGAAGAAGATTGGGAATAGGATGACTGCGTGTCAGCTGGCGTCTATTGGACCGGTGCAGCAAACTCCGGTGGTGGCGGCGGCGCCAGCGCCGTTGGTGGTGGCGGGTTCGGAGTATACGCAGAGGAAGATTTATATAAGTAATGTTGGACCTGAATTGGATGCACAGAAGCTGTTTGGTTTTTTTTCGAGATTTGGAGAGATTGAGGAAGGACCGTTAGGGCTTGATAAGGTGACGGGGAAGCCGAAAGGGTTTTGTTTGTTTGTGTATAAGAGTGCTGAGAGTGCAAGGAGGGCGTTGGAGGAGCCGCATAAGGAGTTTGAGGGGCATATTTTGCATTGTCAGAAGGCGATTGATGGTCCTAAGCCGACAAAGATACAACATCAGCCACAGCAGCAACAGCAACATGTGAATTCGGTGAATCATTTGAACCAATTGAATCCATTGAGTCAGAGGACGCAGTTTCAGAGACATGATAATGTTGGATTTATGGGTGGAAGTAGTGTTGCAGTTAGCCAACCAGGGCACTTAATGGCACCAGCAGGACCAGTAACCGGGTACAATCAGGCGGCTGCTAGTGCTTCTGCTGCACAGGGGCTGAACCCTGCACTGACTCCTGCGCTTGGACAGGCGTTGACGGCGTTGCTTGCTTCTCAGGGTGCTACTTTGGGGCTGGGTAATTTACTGGGGAGTCTTGGAGTGAGTAGTGCGGTTAATCCCGGTGTTCCTGCTGCTGGTCATGGAGTTCAGAGTGGATACAGTGCTCAGCCTACCATAAGTCCAACAGTGATGGGAGCATATGGGAATACTGTACCACAGGCTGGATTGCAGGGGCTATATCCAAATCAGCAGCTTGGACAGGGTGGTTCTGGAAGAGGGCAATATGGTGGAGCCGCACCTTATCACTAG 1473 0.4881 MVRKRKLVKASQQEEPPLKQHQPEPKPEPVPEPEPEPYIPGEEYEEVEEEVEYEEVEEEVEEEEEEEEEEEEEEQQIQVEEDDEPIQKLLEPFSKEQISSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAIDGPKPTKIQHQPQQQQQHVNSVNHLNQLNPLSQRTQFQRHDNVGFMGGSSVAVSQPGHLMAPAGPVTGYNQAAASASAAQGLNPALTPALGQALTALLASQGATLGLGNLLGSLGVSSAVNPGVPAAGHGVQSGYSAQPTISPTVMGAYGNTVPQAGLQGLYPNQQLGQGGSGRGQYGGAAPYH* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2461 490 MobiDBLite consensus disorder prediction 38 80 - -
Mtr7g2461 490 CDD RRM_RBM24_RBM38_like 230 305 - -
Mtr7g2461 490 Coils Coil 44 83 - -
Mtr7g2461 490 SUPERFAMILY RNA-binding domain, RBD 125 209 IPR035979 GO:0003676
Mtr7g2461 490 PANTHER GEO13361P1-RELATED 32 489 - -
Mtr7g2461 490 Gene3D - 222 325 IPR012677 -
Mtr7g2461 490 CDD RRM_RBM24_RBM38_like 127 202 - -
Mtr7g2461 490 SUPERFAMILY RNA-binding domain, RBD 211 320 IPR035979 GO:0003676
Mtr7g2461 490 MobiDBLite consensus disorder prediction 466 490 - -
Mtr7g2461 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 300 IPR000504 GO:0003723
Mtr7g2461 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 195 IPR000504 GO:0003723
Mtr7g2461 490 MobiDBLite consensus disorder prediction 1 83 - -
Mtr7g2461 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 239 IPR000504 GO:0003723
Mtr7g2461 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 319 IPR000504 GO:0003723
Mtr7g2461 490 PANTHER - 32 489 - -
Mtr7g2461 490 SMART rrm1_1 128 200 IPR000504 GO:0003723
Mtr7g2461 490 SMART rrm1_1 231 303 IPR000504 GO:0003723
Mtr7g2461 490 Gene3D - 41 210 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2461 Mtr-Chr7 41085428 41091936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2461 218 309 C2H2 Transcription Factor Family AT2G19380 33.696 7.74e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2461 K12741 - gmx:100784200 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2461 7 41085428 41091936 Mtr7g2461 7 41085428 41091936 ECH