Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2408 ATGGTTTACTGCGATCATTGCGTCAAAAACGTTCGCGCTGAGCTACACGAAGAATGTTACTTGGTTTGTACTTCTTGTGGGAAAGTGTTGGAAGATCAGATTTTAACTGAGGAGCCCACTTTTACTAAAAACTCCGCCGGACAGAGCAAAATATCGGGAAATTTGGTAAAAGCAGTTGAGGAGTTAGATGCTTCACGTAAAAGGACTTTATATAGAGCTTCTAAGGAAATGGAATATTTAAGTCTCAGCCTTGGAGTAAGTGAGGGAGATGTGGTCCGCCAAGCTAGGGCCTTCTATGAAATAGCACTTGCAAAAAATTTCACCCGAGGACGTAAATCAGAGCAAGTACGGGCTGCGTGTCTTTATCTTGCATTCCGGCAAAATAAAAAGCCATACTTTCTTATTGAGTTTTCAAACAATTTAAGGATAAATGTTTATGAGCTTGGAGGAGTTTATTTGCAGCTTTGTGAAGTGTTAAGGCTTGACAATCATCCAATTGTTAAAAAGCCTATCGATCCTTCTCTTTATCTTCATAAATATACTAGTAATTTGCTTGGCCATAGAAATGGGGTTGTCTCTGCAACTGCACTGAACATTATTGCGCAAATGAACCGTGACTGGTTGCAGACAGGGAGGAAACCTGGTGGATTATTTGCTGCTGCATTATACACCTCTGCTAATGCACATGGTCATAAAGTCTCCAAGCGAGATATTCTAAGACTCTTCCATATATGCGAGCAAACGATGAATAAGCGATTGATAGAATATGAGATGACAGACTCTTCTAACTTGACAGTTGAGGAGTTGAATGCAATGGCAAAAGAGAATGAAAAAAATCCGGTTGTAATGCCAAACAGTAAATTCAATGGATCTACTTCAACCCCTCTAGTGTGTGAGCACAAAGAAATGGAAGTGCCCCATTTTGCACTTGGACTATGTGAAACTTGTTACAAGGATTTTGATAAGGTCTCGGGAGGATTTGGTGGTGGTTTGGACCCTCCTGCATTCCAGCGAGCTGAACAAGAGAGAGTCAAGAAAACAAATTCTAAGGAAAATGCAGATGTGGTGAAGGCATCAAATAGCGCATGCAAGGGACAGAAAGAAGATTTTCCTGCCTCTGTTCTAGAAAGGGATGACACTAGTACGGAAGCTCAAGATGAATCAGGAAATTTCTCTGATATTGATGACCAAGAGGTTGATGCGTTCCTTTTCAATGAGGAAGAGAAGTCGTACAGGAAGATAATATGGGAAAATCAGAACCGCGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAGCTGCAGCAGCTCAAAAGAAAATTTATGAAGCAAATTTGGAAAATTGTCCTGTAGAATCAAGAGAGCTTTATGAATCCACCACAGCTTCTGTGGCAAAAACAAGAAAGGAAAAGCAGAGACGAGCTCAACAAGCAAAAAAATCAGGGCCTGCTCAATCTGCTGTAGAGGCTGCTTGCCAAATGGTGAAAAGAAAGGGGCTCAGTAACAAAGTCAATATGGATAACTTTGCAAAATTATTTGAAGACAAACCAGCAGATGAACGTAATCCCAAGAAAGTAAGATTTGATCTAGCCTCTGATAATCACGATGATGAGCTGGGATCAGCGGATTATTTCGAGGATGGTGACAATGATTGGTATAATAATGAAAATATGGATGAATCATATTTCCCTGAAGAAGATGGTTATAATTATGATGAGGGTTATTACTGA 1728 0.4039 MVYCDHCVKNVRAELHEECYLVCTSCGKVLEDQILTEEPTFTKNSAGQSKISGNLVKAVEELDASRKRTLYRASKEMEYLSLSLGVSEGDVVRQARAFYEIALAKNFTRGRKSEQVRAACLYLAFRQNKKPYFLIEFSNNLRINVYELGGVYLQLCEVLRLDNHPIVKKPIDPSLYLHKYTSNLLGHRNGVVSATALNIIAQMNRDWLQTGRKPGGLFAAALYTSANAHGHKVSKRDILRLFHICEQTMNKRLIEYEMTDSSNLTVEELNAMAKENEKNPVVMPNSKFNGSTSTPLVCEHKEMEVPHFALGLCETCYKDFDKVSGGFGGGLDPPAFQRAEQERVKKTNSKENADVVKASNSACKGQKEDFPASVLERDDTSTEAQDESGNFSDIDDQEVDAFLFNEEEKSYRKIIWENQNREYLEEQAAKEAAAAAQKKIYEANLENCPVESRELYESTTASVAKTRKEKQRRAQQAKKSGPAQSAVEAACQMVKRKGLSNKVNMDNFAKLFEDKPADERNPKKVRFDLASDNHDDELGSADYFEDGDNDWYNNENMDESYFPEEDGYNYDEGYY* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2408 575 MobiDBLite consensus disorder prediction 541 566 - -
Mtr7g2408 575 MobiDBLite consensus disorder prediction 461 486 - -
Mtr7g2408 575 Pfam Transcription factor TFIIB repeat 169 255 IPR013150 GO:0017025
Mtr7g2408 575 Pfam Transcription factor TFIIB repeat 67 156 IPR013150 GO:0017025
Mtr7g2408 575 SUPERFAMILY Zinc beta-ribbon 2 46 - -
Mtr7g2408 575 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Mtr7g2408 575 PRINTS Transcription initiation factor IIB signature 118 137 IPR000812 GO:0006352|GO:0070897
Mtr7g2408 575 PRINTS Transcription initiation factor IIB signature 212 228 IPR000812 GO:0006352|GO:0070897
Mtr7g2408 575 MobiDBLite consensus disorder prediction 514 540 - -
Mtr7g2408 575 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 514 IPR029529 GO:0000126|GO:0000995|GO:0006383
Mtr7g2408 575 Gene3D Single helix bin 371 434 - -
Mtr7g2408 575 MobiDBLite consensus disorder prediction 357 392 - -
Mtr7g2408 575 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 514 IPR000812 GO:0006352|GO:0070897
Mtr7g2408 575 MobiDBLite consensus disorder prediction 514 575 - -
Mtr7g2408 575 MobiDBLite consensus disorder prediction 370 384 - -
Mtr7g2408 575 CDD CYCLIN 95 156 IPR013763 -
Mtr7g2408 575 SUPERFAMILY Cyclin-like 74 162 IPR036915 -
Mtr7g2408 575 Pfam Brf1-like TBP-binding domain 392 513 IPR011665 -
Mtr7g2408 575 SUPERFAMILY Cyclin-like 171 256 IPR036915 -
Mtr7g2408 575 Gene3D - 63 164 - -
Mtr7g2408 575 Gene3D - 172 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2408 Mtr-Chr7 40486897 40498452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2408 1 497 Inorganic Solute Cotransporters AT2G01280 38.566 3.33e-95 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2408 K15196 - gmx:100817609 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2408 7 40486897 40498452 Mtr7g2408 7 40486897 40498452 ECH