Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2268 ATGGAGAGATACACGCTACCGTTACCATCACAACAAGTTCACAACACTCTCACTATACCTTGGACTGAACCTCAACAACAAGAATCACCTTCTTCATGGTCCACACCTAACTCCGAACCTAAACACAACCACGAACAAGACATTGCAATAGCTATTGCCATGGCTGGTTCTTCTCTCCCTTTCTTCAAACCCGAACCACAACCCGAACCTGATAACAACTTCTACAACAACAACAACGTTGTTAATGTTAATAATGTTATTCCCTTACCAGACAATTTTCTCATGCACCAAAACACAAACACCATAGATTCAATTTCAAATCCACACTCTTTCTTTCACAACAATAACAACTACTTCTTCAACAACAATAATACCAATAACCCATTTGAAATGGGCTTTGAAAATGGATTCTTTATGGGTAACAACAACACTTCAACTTCCCCTGTTTTCATGGGTGGGTCCCTTTCAGCTTCTGAGTTTCCTCCGAGTCTTGAACTCGATGCTGCTCCAGTACCACCTTTTAGTGCTTCGTTTTCTATGCCTCTTGAGCTAGCTCAACCTCAACCGCAACAACATCATCATCAACAGCAACAGCAACAACCAACGACGCTGTTTCAGAAGCGTCGTGGGGCGTTGGAGATTCCGAGGTTGGAGACTGTGGGGAACAAGAAGAAGAGGAAGGTGGAGAAGAGCTGGGAAGAAGAAGGAAGTGGTGGTGGTGGTGGTGATGATGTGGATGATTTTTCTGAGTTGAATTATGATTCTGATGAGAATGGGAATGATTTGAATAATTCAAATGGGACTGTTGTTACTGGTGGAGATCAGAAGGGAAAGAAGAAGAAGGGGCTTCCAGCGAAGAATTTGATGGCTGAGAGGCGCAGGAGGAAGAAACTCAATGATAGATTGTACATGCTTAGGTCTGTTGTGCCTAAGATTAGCAAGATGGATAGGGCTTCAATACTCGGAGATGCAGTTGACTACTTGAAGGAGCTGCTGCAGCGGATTAATAATCTTCATAATGAACTGGAATCAACTCCACCTGGCTCATTGCTGCAACCTTCTGCAAGTGCAAGCTTTCACCCGTTGACACCCACTCCACCGACTCTTCCCTGTCGAGTCAAAGAGGATCTATATCCTGGTGACTTGCTAAGCCCCAAAAACCAATCTCCCAAGGTGGAAGTTAGAGTAAGGGAAGGGAGAGCGGTCAACATTCATATGTTTTGTACTCGCAGACCAGGACTTTTGCTGTCTACCATGAGGGCTTTGGATAACCTTGGATTGGATGTTCAACAGGCTGTTATCAGTTGTTTCAATGGCTTTGCATTAGATGTGTTCAGAGCCGAGCAGCAATGCAGAGAAGGCCAGGACGTCCTCCCCGAGCAAATTAAAGCCGTGCTTTTGGATTCAGCTGGCTACCATGGTTTGAATTGA 1431 0.4451 MERYTLPLPSQQVHNTLTIPWTEPQQQESPSSWSTPNSEPKHNHEQDIAIAIAMAGSSLPFFKPEPQPEPDNNFYNNNNVVNVNNVIPLPDNFLMHQNTNTIDSISNPHSFFHNNNNYFFNNNNTNNPFEMGFENGFFMGNNNTSTSPVFMGGSLSASEFPPSLELDAAPVPPFSASFSMPLELAQPQPQQHHHQQQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKSWEEEGSGGGGGDDVDDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLLQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQQCREGQDVLPEQIKAVLLDSAGYHGLN* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2268 476 MobiDBLite consensus disorder prediction 211 285 - -
Mtr7g2268 476 SMART finulus 288 337 IPR011598 GO:0046983
Mtr7g2268 476 MobiDBLite consensus disorder prediction 255 272 - -
Mtr7g2268 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 331 IPR011598 GO:0046983
Mtr7g2268 476 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 70 475 - -
Mtr7g2268 476 PANTHER BHLH TRANSCRIPTIONAL FACTOR 70 475 - -
Mtr7g2268 476 CDD bHLH_AtAMS_like 285 349 - -
Mtr7g2268 476 MobiDBLite consensus disorder prediction 15 43 - -
Mtr7g2268 476 MobiDBLite consensus disorder prediction 211 237 - -
Mtr7g2268 476 Gene3D - 274 345 IPR036638 GO:0046983
Mtr7g2268 476 MobiDBLite consensus disorder prediction 15 39 - -
Mtr7g2268 476 Coils Coil 325 345 - -
Mtr7g2268 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 285 351 IPR036638 GO:0046983
Mtr7g2268 476 Pfam Helix-loop-helix DNA-binding domain 289 331 IPR011598 GO:0046983
Mtr7g2268 476 MobiDBLite consensus disorder prediction 185 204 - -
Mtr7g2268 476 CDD ACT_UUR-ACR-like 404 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2268 Mtr-Chr7 39079673 39082777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2268 113 448 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 54.223 2.32e-100 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr7g2268 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2268 - - mtr:MTR_7g083900 791.186