Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2250 ATGTCGTTTCCGTGTGACTATTGCGACACAAGAAGCGCGGTGCTATATTGCAAACCAGACTCCGCGAAACTCTGTTTAGTTTGCGACCAGCACGTGCACTCCGCAAACGCACTCGCACTCAAGCACGTGCGTTTCCAAATCTGTCAAAACTGCAAAAACGACGCCGCTTCAGTTCGTTGCTTCACCGAAAACCTAGTTCAATGTCACCGCTGCGATTGGAACTCTCACGGCGGCGACGACGACGACTCCACCTCTTCATCCTTCCACCACCACAACCGCCGCCGTATTGAAGGTCTCACCGGTTGTCCATCCGTTCACGAGATCGTTTCTACCTTGGGACTTGATTTGAAGCCGAACGACGCGGTTTTCGTAGCGGAATTTGAAGGTCCAGTGGTTCCGGTTGTGAAGAATAGGGATGAGGTGTATGAACAGGTGGTGGAAGTTGCGAAGAGGAAGAGGAATTTGGAGGAAGATCAAAATGAATTGAGATTCAATGATTGTTGTAATGATGTTGATGATTTGTTGTTGCTTCAGCAAACTCCGTTTACTTCTTTGCTTAATTTTTCGTCTGAGTTTGATGTTGGTGTTAAGAGAAATAGTAATGATTATGGAAATGAATCTGGTCTTCTTCTTTGGGATCGTAATCCGTCGTATCAACCTCCTCAGGTCTGGGATTTTCAATTACAGAAATCAAGAGATATGACATATGATGGTGTAGAAAATGCTTCCTTATCGATTCCAAAATCATTACAAGATGTGCACAATATGAATTGCTCAACACTTGGTGATGATATTCTATCAAGAAATAATCAATCGGATCAGTCATCATCAAGCCATGTGAAGAAGAAAGTAGAAAGCAACAAGAAAACTAGAGATGGGTTGTCTTCTGAGTCCAAATTGATTGAATCCATAACATACAGTGGCGCCGACAGTGTACCAGTTATGGAACATCTTTTGAGTGGGAGTGAAAATGTTAGCAACATAAATGCCAAGATTAGCTTGGAAGAGCACACAAGGAATAGAGGGGATGCCATGTTACGGTACAAGGAGAAGAAGAAAACTCGAAGGTTTGACAAGCACATTCGCTATGAATCAAGGAAGGCTAGGGCTGATACGAGAAAGAGAGTGAGAGGGCGATTTGTTAAGGCAACTGATGATATTCAAGAAGGATGA 1173 0.4356 MSFPCDYCDTRSAVLYCKPDSAKLCLVCDQHVHSANALALKHVRFQICQNCKNDAASVRCFTENLVQCHRCDWNSHGGDDDDSTSSSFHHHNRRRIEGLTGCPSVHEIVSTLGLDLKPNDAVFVAEFEGPVVPVVKNRDEVYEQVVEVAKRKRNLEEDQNELRFNDCCNDVDDLLLLQQTPFTSLLNFSSEFDVGVKRNSNDYGNESGLLLWDRNPSYQPPQVWDFQLQKSRDMTYDGVENASLSIPKSLQDVHNMNCSTLGDDILSRNNQSDQSSSSHVKKKVESNKKTRDGLSSESKLIESITYSGADSVPVMEHLLSGSENVSNINAKISLEEHTRNRGDAMLRYKEKKKTRRFDKHIRYESRKARADTRKRVRGRFVKATDDIQEG* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2250 390 CDD Bbox1_BBX-like 4 47 - -
Mtr7g2250 390 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 3 386 - -
Mtr7g2250 390 SMART bboxneu5 4 47 IPR000315 GO:0008270
Mtr7g2250 390 MobiDBLite consensus disorder prediction 278 296 - -
Mtr7g2250 390 Coils Coil 138 158 - -
Mtr7g2250 390 MobiDBLite consensus disorder prediction 262 297 - -
Mtr7g2250 390 Pfam CCT motif 341 383 IPR010402 GO:0005515
Mtr7g2250 390 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mtr7g2250 390 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 386 - -
Mtr7g2250 390 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515
Mtr7g2250 390 MobiDBLite consensus disorder prediction 262 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2250 Mtr-Chr7 38894271 38899035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2250 5 385 C2C2-CO-like Transcription Factor Family AT2G33500 35.629 4.52e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mtr7g2250 CCT 2.2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2250 - - aprc:113862926 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2250 7 38894271 38899035 Mtr7g2250 7 38894271 38899035 ECH