Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2238 ATGGCAGACCCTTCAGCCATTTATGAGTTCCTCATGAAACAACAAACTTCATCATCACCATCACCACCACCACCAAGAACAACCAGAAGATCATCACAGCCACAACAACCTTCAAGAATTTTTCAGTGTCAATATTGTCACCGAAAATTCTACACTTCTCAAGCTCTTGGTGGTCACCAAAATGCTCACAAACAAGAAAGAGCTGCTGCTAGATCAAAAACCATCAACCTCAACACCACCAACAACAACAACAACGTTGTTCCTTTTTCACCACCACCACAGTCATATGTTTCTGAACAACATGAACAAGGTGGTTTCTTTCATCATTACCCTTATTGGCAACAAATGGAACCTATACAGTTTCAAACACCACAACAACATCATGTTGAAGCAGCAACAAACACTTTTCATCCTATGGTTCCTTGCAATGGTTATGCTTCTGGTTTTGGTGCTTCATCTTCCACTCCTCACTATGTTTTCTCCAACAATGCTGCTTCTGCTTCTACTTCTCCTCAGTTTGTTGATGCTTCTGACCATGTCAATCTTGATCTCACTCTTCACCTTTGA 567 0.4109 MADPSAIYEFLMKQQTSSSPSPPPPRTTRRSSQPQQPSRIFQCQYCHRKFYTSQALGGHQNAHKQERAAARSKTINLNTTNNNNNVVPFSPPPQSYVSEQHEQGGFFHHYPYWQQMEPIQFQTPQQHHVEAATNTFHPMVPCNGYASGFGASSSTPHYVFSNNAASASTSPQFVDASDHVNLDLTLHL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2238 188 PANTHER ZINC FINGER PROTEIN JAGGED 17 188 IPR045320 GO:0003700
Mtr7g2238 188 Gene3D Classic Zinc Finger 26 90 - -
Mtr7g2238 188 PANTHER ZINC FINGER PROTEIN KNUCKLES 17 188 - -
Mtr7g2238 188 SUPERFAMILY beta-beta-alpha zinc fingers 38 68 IPR036236 -
Mtr7g2238 188 MobiDBLite consensus disorder prediction 11 38 - -
Mtr7g2238 188 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Mtr7g2238 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2238 Mtr-Chr7 38743245 38743811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2238 39 87 C2H2 Transcription Factor Family AT5G14010 65.306 4.30e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr7g2238 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2238 - - mtr:MTR_7g083210 336.65