Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr7g2227 | ATGGATGATCAAATTGACTCATATTCTCCTAATACATCGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTGTGGTACCTTGAAGTATGCACATCGAATATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATTTGCCAACAGCAACTTAAAGGCTACACTGCTCCTCCACCAGCTCCTTTATTCCGCTATGGGGGCAACTGGGAAATTCCAAATATCGGTCTTAATAATCATCGATTCATAGCACTGTTTCCTACTAATCATGAATTCCTAGACCTTGACTTTGAATATTCTGCACCCTCTACAAGGAGCCTAATGTTCTTCCGCATTGTTACTGTTATTTTTGTTGTTCTGCTTGTTTTACGTCATACACTACCAATCATACTCATGCTCAATGGAGTAGGAGAGTATTCTCTGACAGTGTTTATGTTGCTAGTGTGGGGAATCGTTGGATTAATTATACCAGTGTATATGATGGTCAAAGCTCTTAGCGCTATCCAAGTCCAACAACTTCAACACCAGGATCATAATTCCTTTGTGCAATCACGTGAGGAAAATGACATGGGGCAGTCTCAATTGCGTGCCATCCATATTCAGTGA | 645 | 0.4016 | MDDQIDSYSPNTSVQCRICHDEDEDLNMDTPCSCCGTLKYAHRICVQRWCNEKGDTTCEICQQQLKGYTAPPPAPLFRYGGNWEIPNIGLNNHRFIALFPTNHEFLDLDFEYSAPSTRSLMFFRIVTVIFVVLLVLRHTLPIILMLNGVGEYSLTVFMLLVWGIVGLIIPVYMMVKALSAIQVQQLQHQDHNSFVQSREENDMGQSQLRAIHIQ* | 215 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr7g2227 | 214 | Pfam | Protein of unknown function (DUF3675) | 67 | 177 | IPR022143 | - | |
| Mtr7g2227 | 214 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 8 | 207 | IPR033275 | - | |
| Mtr7g2227 | 214 | CDD | RING_CH-C4HC3_MARCH | 16 | 62 | - | - | |
| Mtr7g2227 | 214 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 8 | 68 | IPR011016 | GO:0008270 | |
| Mtr7g2227 | 214 | SMART | ringv_2 | 15 | 62 | IPR011016 | GO:0008270 | |
| Mtr7g2227 | 214 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED | 8 | 207 | - | - | |
| Mtr7g2227 | 214 | Pfam | RING-variant domain | 16 | 61 | IPR011016 | GO:0008270 | |
| Mtr7g2227 | 214 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 71 | IPR013083 | - | |
| Mtr7g2227 | 214 | SUPERFAMILY | RING/U-box | 11 | 65 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr7g2227 | Mtr-Chr7 | 38593954 | 38596531 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr7g2227 | 3 | 62 | C3H Transcription Factor Family | AT2G37950 | 41.270 | 4.56e-07 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr7g2227 | - | - | lja:Lj1g3v3244520.2 | 279.256 |