Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2223 ATGGCTCCGAAATCCAAATCCCAAACCCTAGAATCGTTAAACTCCACCCAATTATACCTCAACGCACTTCAATCCCTCAATCTCCCACCACCCACCCTCCCCCTCCCACCACTCCCTTCCTCCACCATCCCCCACTCCAAACTCATCCCCAACACCCGCTTCCTCATCGACTCCTTCCGCCACACCACCCCCTCCTCCTTCACCTACTTCCTCTCCCACTTCCACTCCGATCACTACTCCCCCCTCTCTTCCTCCTGGTCCCACGGCATCATCTTCTGTTCTCCAATCACCTCCCACCTCCTCATTAACATTCTCCACATCCCATCCCCTTTCGTCCACCCTCTCTCTCTCAACCAATCCGTCGTCATCGACGGCTCCGTTGTAACCCTAATTGATGCCAATCACTGCCCTGGCGCCGTTCAGTTTCTTTTTAAAGTGAATGAAACTGAATCCCCTAGGTATGTTCATACTGGTGATTTTAGGTTTAATCGTGAAATGTTGTTGGATTTGAATCTTGGTGAATTTATTGGTGCGGATGCTGTGTTTTTGGATACGACTTATTGTCATCCCAAATTTGTTTTTCCGACTCAAAATGAATCGGTTGATTATATCGTTGATGTCGTAAAGGAATGTGATGGTGAGAATGTTTTGTTTCTTGTTGCTACTTATGTTGTTGGTAAGGAGAAGATTTTGCTTGAGATTGCACGGAGGTGTGGGAAGAAAGTGTGTGTGGATGGAAAAAAGATGGAGGTTTTGCGGGCTCTTGGGTATGGTGAGAGTGGTGAGTTTACCGAGGATAGGTTGGAGAGTAATGTGCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCTTATTTTAGGCCGAATTTTGTTAGGATGAAGGAGATTATGGTTGAGAGAGGGTATTCTAAGGTTGTGGGGTTTGTGCCGACTGGATGGACTTATGAAGTGAAGCGTGATAAGTTTAAGGTTAGGGAGAAAGATTCGTGTAAGATTCATCTTGTGCCGTATAGTGAGCATTCGAATTATGAGGAGCTTAGGGAATATGTGAGGTTTTTGAAACCGAAGAAGGTCGTTCCAACTGTGGGTTTAGATGTTGAAAAGAGTGATAGTAAACATGTTGATAAAATGAGGAAGTATTTTGCTGGATTGGTTGATGAGACGGCCAACAAGCATGAGTTTTTAAAGGGTTTTAAGCAGTGTGACTCTGGTAGATCGGGTTTTGAGGTCGGGAAGGATGTTGGTAATGATACGGAACCAGGGCATAGCGTCGAGAAAGAGGTGAAGCCGTCTGATGTGGGAGGGGATAAAAGTATTGATCAGGATGTTGCTATGAGTCTATCATCTTGTATGGGAGAAACTTGCATAGAAGATCCTACGTTGCTAAATGATGAGGAAAAAGAGAAAGTTGTTCAGGAATTAAGTTGTTGTTTGCCCACATGGGTCACCCGAAGCCAGATGTTAGATCTGATCAGCATCTCTGGGAGCAACGTCGTTGAAGCTGTTTCTAATTTCTTTGAACGTGAAACTGAATTTCATGAGCAAGTAAATTCCAGTCAAACTCCAGTTCCAACACACAGATCTTGCTCATCGAATGACACCAGTCCGCTTTCAAAATCAAATCTCAAGTCTTTCTCATCGAATGACGCCAGTCCGTTTTCAAAATCAAACCTCAACAATACAAACAGCACTACAAAAAAATTGGACCTTTTTCGAAGTCAAGAGTCTAAATTGACTAACCTAAGGAAAGCACTATCAAATCAGATTTCCCCTTCCAAAAGAAAGAAGGGTAGTGAAAGTAAGTCAAACAAGAAAGTAAAAGTCAAAGCAAAATCAGAATCAAGTGGTTCAAAGCAGGCAACAATAACAAAATTCTTTGGCAAAGCAATGCCTGTGATGCCTGGTGATACTCAATCTGATCAATTTGGATCGAAGCCTGGTGAGAGCCCCGAAGTTGAAGAATTGGTGCCAACTGATGCTGGAAATATGTATAAGCAAGAGATTGATCAGTTTATGCAAATAATAAACGGGGACGAGTCATTGAAAAAGCAAGCAATTACTATAATTGAGGAGGCAAAAGGAGACATCAACAAGGCATTGGATATATATTACTCTAATTCTTGCAATCTTGGTGAAAGGGAAATATCAGTTCAAGGGGAATGCAAAGTTGACAGACCTTTAGAGAAGAAGTATGTGTCAAAAGAGTTGAATGTTATACCTGATATTTCTATGCATAGAGTATTAAGAGATAATGTAGATGCAACTCATGTATCACTACCATCTGATAAATACAACCCCAAAGAACATGCGTGTTGGAGAGATGGACAACCGGCGCCATATTTACATCTTGCACGAACCTTCAGCCTGCTTGAGGATGAGAAAGGAAAGATAAAAGCTACTTCCATACTATGCAACATGTTCAGAAGTTTGTTGGTCTTGTCTCCAGAAGACGTGCTTCCTGCTGTGTATCTATGTACAAACAAAATTGCTGCAGACCATGAAAATGTGGAACTAAATATTGGTGGAAGTTTAGTCACTACAGCACTCGAAGAGGCATGTGGGACAAACCGATTGAAAATAAAGGAGATGTATAATAAACTGGGCGACCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTTGCACCACCTACACCGCTTCTAATTAAGGATATTTACTCTGCACTGCGAAAGATAAGTGTACAAACAGGCAATGGAAGCACATTACGAAAGAAAGGCATCATTCTTCATCTCATGCGTTCTTGCCGTGAAAAGGAGATGAAGTTTCTTGTTCGAACCTTGGTCAGGAACTTGAGGATTGGGGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGTTATGAATTCTCGCCCAACTGTGTACGAAGAAGGAACAGCAGAAAATTTGAAGGCAGCGCTTCAGGTCCTTTCTGTGGCAGTTGTTGAAGCATATAACATACTGCCAAATTTGGATATCATAGTACCAACTCTCATGAACAAAGGCATTGAGTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCAATCAAGCCTATGCTTGCAAAGATCACCAATGGCATTCCCCAAGCATTGAAGCTATTTCAAAATAAAGCATTCACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAAATTAGTTGATGGATCAGTTCTTGTTTTTTCAAGAAATGGAGATGAATCAACTTCGAGATTCCCTGATCTGGTTGACATGATAAAGGAATCTTGCAAGCCTGTTGCATCAACTTTCATAATTGATGCCGAGGTTGTTGGCATTGATAGAAAAAATGGATGTAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGGAGAGGAGGCAAGGATACTTTAGTCACCAAAGAGAGCATAAAGGTGGGCATTTGCATCTTTGTCTTCGATATCATGTTTGCAAATGGAGAACAGTTACTGGGTTTCCCTCTCCGCCTAAGACGAAAGTATCTGAAGGCTTTGTTCTATGATGAACGACCTGGGTATTTTGAATATGCAAAAGAAACATCTATAGAAGCAGATGATGCTTGCTTAACATGTGAAGCCACATTAACTAGAATAAATGCTTTCCTTGAAGATGCACTGCACTCTTCATGTGAAGGAATTATGGTGAAAACGTTGGATATTGATGCTGGGTATTCTCCATCGAAGCGTTCTGACAAATGGTTAAAGGTCAAACGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTCATGGCATGTTTCAATCCTGAAACTGAAGAGTATCAAAGTGTGTGCCGAGTAATGTCTGGGTTCACAGACTCTTTTTACATTGAGATGAAAGAATTCTTATCTGAGGACAAATTGTTGTCAAAAAAGCCGCCATATTATCAAACAGGAGAGACACCAGACATGTGGTTTTGTCCACAACTTGTTTGGGAAATAAGAGGTGCAGACTTTACAGTATCCCCAGTTCACCATGCTGCCATTGGTTTGGTTCATCCTTCTAGAGGCATCTCTATCAGATTTCCAAGATTTATTTGCAGAGTGTCAGACAGAAACCCAGACGAATGCAGCACTGCTGCTGATATAGTTGAAATGTTTCATTCCCAGACTCGGAAAATGGATGTCCAAATTGAAGATTGA 4230 0.4177 MAPKSKSQTLESLNSTQLYLNALQSLNLPPPTLPLPPLPSSTIPHSKLIPNTRFLIDSFRHTTPSSFTYFLSHFHSDHYSPLSSSWSHGIIFCSPITSHLLINILHIPSPFVHPLSLNQSVVIDGSVVTLIDANHCPGAVQFLFKVNETESPRYVHTGDFRFNREMLLDLNLGEFIGADAVFLDTTYCHPKFVFPTQNESVDYIVDVVKECDGENVLFLVATYVVGKEKILLEIARRCGKKVCVDGKKMEVLRALGYGESGEFTEDRLESNVHVVGWNVLGETWPYFRPNFVRMKEIMVERGYSKVVGFVPTGWTYEVKRDKFKVREKDSCKIHLVPYSEHSNYEELREYVRFLKPKKVVPTVGLDVEKSDSKHVDKMRKYFAGLVDETANKHEFLKGFKQCDSGRSGFEVGKDVGNDTEPGHSVEKEVKPSDVGGDKSIDQDVAMSLSSCMGETCIEDPTLLNDEEKEKVVQELSCCLPTWVTRSQMLDLISISGSNVVEAVSNFFERETEFHEQVNSSQTPVPTHRSCSSNDTSPLSKSNLKSFSSNDASPFSKSNLNNTNSTTKKLDLFRSQESKLTNLRKALSNQISPSKRKKGSESKSNKKVKVKAKSESSGSKQATITKFFGKAMPVMPGDTQSDQFGSKPGESPEVEELVPTDAGNMYKQEIDQFMQIINGDESLKKQAITIIEEAKGDINKALDIYYSNSCNLGEREISVQGECKVDRPLEKKYVSKELNVIPDISMHRVLRDNVDATHVSLPSDKYNPKEHACWRDGQPAPYLHLARTFSLLEDEKGKIKATSILCNMFRSLLVLSPEDVLPAVYLCTNKIAADHENVELNIGGSLVTTALEEACGTNRLKIKEMYNKLGDLGDVAQECRQTQRLLAPPTPLLIKDIYSALRKISVQTGNGSTLRKKGIILHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVVMNSRPTVYEEGTAENLKAALQVLSVAVVEAYNILPNLDIIVPTLMNKGIEFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHKLVDGSVLVFSRNGDESTSRFPDLVDMIKESCKPVASTFIIDAEVVGIDRKNGCRIMSFQELSSRGRGGKDTLVTKESIKVGICIFVFDIMFANGEQLLGFPLRLRRKYLKALFYDERPGYFEYAKETSIEADDACLTCEATLTRINAFLEDALHSSCEGIMVKTLDIDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFTDSFYIEMKEFLSEDKLLSKKPPYYQTGETPDMWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFICRVSDRNPDECSTAADIVEMFHSQTRKMDVQIED* 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2223 1409 CDD OBF_DNA_ligase_I 1255 1398 - -
Mtr7g2223 1409 Pfam DNA repair metallo-beta-lactamase 261 364 IPR011084 -
Mtr7g2223 1409 CDD SNM1A-1C-like_MBL-fold 43 190 - -
Mtr7g2223 1409 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1050 1058 IPR016059 GO:0003909
Mtr7g2223 1409 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 759 1009 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mtr7g2223 1409 SUPERFAMILY Nucleic acid-binding proteins 1255 1399 IPR012340 -
Mtr7g2223 1409 Gene3D - 49 363 IPR036866 -
Mtr7g2223 1409 SUPERFAMILY Metallo-hydrolase/oxidoreductase 69 364 IPR036866 -
Mtr7g2223 1409 MobiDBLite consensus disorder prediction 411 438 - -
Mtr7g2223 1409 MobiDBLite consensus disorder prediction 514 622 - -
Mtr7g2223 1409 Gene3D DNA ligase/mRNA capping enzyme 1055 1186 - -
Mtr7g2223 1409 Gene3D - 1251 1408 IPR012340 -
Mtr7g2223 1409 Gene3D - 193 341 - -
Mtr7g2223 1409 Pfam ATP dependent DNA ligase domain 1026 1246 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mtr7g2223 1409 Pfam DNA ligase N terminus 780 956 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mtr7g2223 1409 Gene3D - 757 1028 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mtr7g2223 1409 MobiDBLite consensus disorder prediction 416 437 - -
Mtr7g2223 1409 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 9 783 - -
Mtr7g2223 1409 Gene3D - 1037 1250 - -
Mtr7g2223 1409 CDD Adenylation_DNA_ligase_I_Euk 1017 1249 - -
Mtr7g2223 1409 Pfam ATP dependent DNA ligase C terminal region 1272 1376 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mtr7g2223 1409 MobiDBLite consensus disorder prediction 634 653 - -
Mtr7g2223 1409 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 982 1248 - -
Mtr7g2223 1409 MobiDBLite consensus disorder prediction 516 594 - -
Mtr7g2223 1409 ProSiteProfiles ATP-dependent DNA ligase family profile. 1137 1284 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mtr7g2223 1409 PANTHER DNA LIGASE 9 783 - -
Mtr7g2223 1409 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 838 1396 IPR000977 GO:0003910|GO:0005524|GO:0071897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2223 Mtr-Chr7 38540903 38553854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2223 761 1399 Core DNA Replication Machinery Family AT1G08130 39.752 2.09e-165 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2223 - - gmx:100807673 2108.18