Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2221 ATGGCTAGGAAGAAAGCTAAGTCTGATCCATCGAAGCCGAAGAGGCCACAGTCTCCTTTCTTTCTTTTCATGTCTGACTTCAGAGTGAGGTTCAGGAAGGAAAATCCAGACAATAAATACGTCTCTGTGGTTGGTAAAGCTGCCGGTGAAAAATGGAGATCGATGTCTGATGCTGACAAGGCTCCTTACGTTGCTGATGCAGAAAAGAAGAAAATGGAATATGTGAAGGCCATTCATGCCTACAATAAGAAGGTTCTGATGGCCTGCAATAATACTAATTTGGTTGCCGGAAAAAAATCCTCTAGCGGAAAAAGTTTTGTCAAGTCAAATTCTGAACTCAATGATGATGATGATGACGACGACGACAATGAGGAGGAGGAGGAGGAGGATGATGAATCTGGTGACCAAGATACTGCTTATAATCCTGCATCAAGGACTAAGAAGGTAAAACAAATGGTCGGCACTTCCACCCAAGGTTTCCCGTCTAAGGTGTTGGAAATTTCTTCCTCCCCCTCAACTTCCTTTCCTAATGAGTCTTCGCTGTCGCCTGAAATCCAAGTCCAGTCGAAGCCTTTTGGTCCACAGGCGACTGCTACTCTGACTCAATCTTTTGATTCAAGACAGAAAGTTGTGCTGGCATTAGAAGTTCAGCCTTTCCCGATTTCTGATCCTGTTGTGTCCGCAAACCCACAAACAAATGTCTCTCCATCTGTAGATGTAGTCATGAAGGACCAAGTAGTAATTCCCGAAGAAATGGGCACCTCGGAAGGGGGTTTCCAGGATGTTCACCCTGATCAAGATCCAAGGGATGACCTACTTCACCAGGTTAAGCAAGCATGTAATGGGGACAGTGGCGACGCTGACCCCGCAGATGACTTGCTTTCTTTGCTGACTAACTCAAGTCCTACAGCTTCTGTGTTTGCTGGGCTTGATTCTAGTGACTCGGAAGCCATGCAACTTTTCAAAGATCTGAAGCTACTAGTGTCGAAGCCATTGGATGTCGCTTCTGCTGACACCTCTGCATTCGATCAGATGAGGAGGCTAGTTGAAAAACTCAAGCCTCTCAAGCAACGGTTGCCTCTCTCAGGCCAAAGTACACTTGAGCAGGTCAACAACTTTCTATCCCTTCATGCCTCCAAGAATGCTTTCTTAACAGCCACCCTTCCTGTTTACGAGCAAGCGGTGAATTCCAAAGAGGACTTGGTAAAGAAGCTCCTTCCTCTCAAAGAACAAAAAGAAAATATTGCGGTAAATAAAAAGCAGCATGAGGCAGTTAAGGTCAAGGCTGAAGAGAAAGTTGAGCAACTCAAGAAGCAATTGGCCTTAGCTGAGGTGGAACTAGCTGAAGCCAACACAGGTATTGCTGTCTTTATCAATTCAGAGAAAAAGCGCGTCGACAGCATCAATGCCCTTCGTGATGAGGTGAATCAGACGGTGAAAACTCTAAGGAATCTTCAGTCTGACTACGAGTTAGCAGTGTTGACTAGGAAAGAACTTGAGGATCTCTTGTTGGTGATTACCCAATCCAGTCGCCCTTGA 1539 0.4542 MARKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDADKAPYVADAEKKKMEYVKAIHAYNKKVLMACNNTNLVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDESGDQDTAYNPASRTKKVKQMVGTSTQGFPSKVLEISSSPSTSFPNESSLSPEIQVQSKPFGPQATATLTQSFDSRQKVVLALEVQPFPISDPVVSANPQTNVSPSVDVVMKDQVVIPEEMGTSEGGFQDVHPDQDPRDDLLHQVKQACNGDSGDADPADDLLSLLTNSSPTASVFAGLDSSDSEAMQLFKDLKLLVSKPLDVASADTSAFDQMRRLVEKLKPLKQRLPLSGQSTLEQVNNFLSLHASKNAFLTATLPVYEQAVNSKEDLVKKLLPLKEQKENIAVNKKQHEAVKVKAEEKVEQLKKQLALAEVELAEANTGIAVFINSEKKRVDSINALRDEVNQTVKTLRNLQSDYELAVLTRKELEDLLLVITQSSRP* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2221 512 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 127 - -
Mtr7g2221 512 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 13 82 IPR009071 -
Mtr7g2221 512 SMART hmgende2 12 83 IPR009071 -
Mtr7g2221 512 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 127 IPR031061 -
Mtr7g2221 512 Coils Coil 468 502 - -
Mtr7g2221 512 MobiDBLite consensus disorder prediction 137 194 - -
Mtr7g2221 512 Pfam HMG (high mobility group) box 13 82 IPR009071 -
Mtr7g2221 512 MobiDBLite consensus disorder prediction 113 136 - -
Mtr7g2221 512 CDD HMGB-UBF_HMG-box 13 78 - -
Mtr7g2221 512 Coils Coil 419 453 - -
Mtr7g2221 512 MobiDBLite consensus disorder prediction 97 194 - -
Mtr7g2221 512 SUPERFAMILY HMG-box 4 84 IPR036910 -
Mtr7g2221 512 Gene3D High mobility group box domain 1 88 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2221 Mtr-Chr7 38525446 38532472 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mtr7g2221 HMG_box 8.5e-20 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2221 K25507 - mtr:MTR_7g082820 222.246