Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2158 ATGCCTCCGAAAGTGGTGAAAAGAGGTTCTGCGGCAAAGAAGGCGAAGGTTTCTTCAAAAACCTCAATTCAGAATCCGCCGCAAGAACCTGAACCCAAACCTATCAAGAATCATGAAGACAATCATGTTGATGATTCTGCGGTGGAGGAGAATTCTGTTGAAACAGTGCCTAATGGTGTAGCTATGGTGGAAAACAATGGAGAGGAGGTTAAGGAGTCCATAGATGAATATGAAAAAGATGAACACTTAGATTTTGAGGATAATTATCATGAGTATGATCCTGAGGAGTATGTTGGTGATGATGACTATGATGAGAGAGGAATTGAACAAGACGAGGGTCAGGAGGCCGGAGATGAAGTGGAGGAAGAACCTGAAGAGAATGTGGATGAAGAAGAGGGTGATACAGGTGATGAGGAAGTTGAAGAAGTTGAATATGTTTATGAAGAAGTCGAGGGTGATGATGATGATGTTGCTGGTGATGATGAGCATGCCAGTGAGGAGAACGTGCATGAGCATCTGGCTGATGTAAAGGAAGAGGAACAAGTTGAAGTTATAAAGGAGACGCAGAAGCAGAAGGAATTGGAAGTATTTGTTGGGGGCCTAGACAAGGAGGCTACAGAGCATGATTTGAGGAAGGTTTTCAGTAAAGTTGGGGAGATTACTGAAGTTAGGATGACTGTGAATCCTCAGACTAAAAGAAACAAGGGATTTGCTTTATTGCGTTTTGAAACTGTTGAACATGTTAAAAGAGCATTGGCAGAGCTAAAAAATCCTGTGATTAATGGCAAACAATGTGGTATCACTATCACCACATGTCAGGACAGTGATACTCTTTATTTAGATAACATATGCAAGTCATGGAAAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATGGAGTTGAAAGTTTCAAGGATTTGACTTTATTAGAAGATGATAACAATGAGGGAACAAACTGTGGATGTGCTTTTTTGGAATTTTCATCTCATTCAGATTCTAAGGACGCCTATAAGCGATTGCAGAAGACAGATGTTGTTTTTGGAGTTGATAAACCTGCCGAGGTTTCCTTTGCAAACTCCTTTATTGACCTGGGTGATGATATTATGGCACAGGTTAAAACAGTATTTATTGATTTACTGCCTCCTTCATGGGATGAAGATTATGTCCGAGCTCTTCTTAAGAAATATGGGGCGGTTGAAAAAGTTGAGCTTGCTAAGAACATGCCAGGTGCTCGCAGGAAGAATTATGGATTTGTTACGTTTGGTACACATGCTGCTGCTGTAGAATGTGCTGAGAGCATTACCAGTGCAGGGTTAGGCGAAGGCAACAAAAAGGCAAAAGTTAGGGCTAGATTGTCGAGACCTCTTCCGAAAGTTCGTGGTAAACATGTTCCTCATAGGGACATTTCTGGCCGCAAGATTGGAAGATTGGAAAGGCCTTCACGTAGTAGACCTGCACCACGTAGTAGACCTGCACCACAGAGTCGACCTGCTCATGTGTTCAGAAGACTTGGGAGTCGCATTCCACCAGCTAGACCTTCTAGTGCGAGAAATAGACGTCCTGTAACGTCGATACCAGTAAGAGCTAGGCCAGCCTCTCCTCCAGCTAGATCCTACAGGAGATTAGCAGCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGGTCGACCTGTGGATCTGCCACCTCCAAGAAGTAGAGTTTCTGCAGATTATGGTTCTCAGGTGGTCTCTCAAAGAGGTCCATCTTATAGAGATTATCCAGCCCGTGACTCTGGCTACCCTGACCTGCATAGGGATACATCTCGTACTGCACCAAGGAGGGGTTATCTGGATGATGGTTATGATCGGAGACTTGAAAGGCCTCCTTCTCCATCTCCCCGTCTAAGTTATCGCGAAGGACGCCCCCGCGATTATGACGCACTATCTGGCTCGAAACGTCCTTATGCTGCCATAGATGACATTTCTCCACGGTATGCTGATGCTGGTGCTCGCCAATCAAGATCTCGTTTAGACTATGACTATGGAGGCAGTGCTTCCCGATATAGAGAGGCTTATGGTGATAGTAGGCTCGAAAGATCTAGTTTAGGATATAGTGGCAGTAGAAGTTCTCTATCTAATCAAAACTCACATGGGGCATATAGCAGTCGACAGGACCCAAGTTATGGCAGAGGCTCTCTTGGTGGTAGTGATGGAGGTATCTACTCATCAAGCTATGGTGGTGATTACTTATCTCGTGGAAGTGATGTTGGTGGCAGCTCATATTCATCCATGTATTCTAGTAGGGGTATGAACGGTAGTAGCAGTTATATGAGTGGTAGCGGTGGTGGATCTAGATCTTATTATTGA 2349 0.4381 MPPKVVKRGSAAKKAKVSSKTSIQNPPQEPEPKPIKNHEDNHVDDSAVEENSVETVPNGVAMVENNGEEVKESIDEYEKDEHLDFEDNYHEYDPEEYVGDDDYDERGIEQDEGQEAGDEVEEEPEENVDEEEGDTGDEEVEEVEYVYEEVEGDDDDVAGDDEHASEENVHEHLADVKEEEQVEVIKETQKQKELEVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVDKPAEVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVECAESITSAGLGEGNKKAKVRARLSRPLPKVRGKHVPHRDISGRKIGRLERPSRSRPAPRSRPAPQSRPAHVFRRLGSRIPPARPSSARNRRPVTSIPVRARPASPPARSYRRLAAAYPKSSMKRDYGRPVDLPPPRSRVSADYGSQVVSQRGPSYRDYPARDSGYPDLHRDTSRTAPRRGYLDDGYDRRLERPPSPSPRLSYREGRPRDYDALSGSKRPYAAIDDISPRYADAGARQSRSRLDYDYGGSASRYREAYGDSRLERSSLGYSGSRSSLSNQNSHGAYSSRQDPSYGRGSLGGSDGGIYSSSYGGDYLSRGSDVGGSSYSSMYSSRGMNGSSSYMSGSGGGSRSYY* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2158 782 MobiDBLite consensus disorder prediction 68 89 - -
Mtr7g2158 782 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Mtr7g2158 782 MobiDBLite consensus disorder prediction 440 645 - -
Mtr7g2158 782 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 360 IPR000504 GO:0003723
Mtr7g2158 782 CDD RRM_SF 375 449 - -
Mtr7g2158 782 MobiDBLite consensus disorder prediction 1 174 - -
Mtr7g2158 782 MobiDBLite consensus disorder prediction 591 623 - -
Mtr7g2158 782 Gene3D - 276 359 IPR012677 -
Mtr7g2158 782 SUPERFAMILY RNA-binding domain, RBD 195 300 IPR035979 GO:0003676
Mtr7g2158 782 MobiDBLite consensus disorder prediction 32 49 - -
Mtr7g2158 782 Gene3D - 160 274 IPR012677 -
Mtr7g2158 782 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 373 455 IPR000504 GO:0003723
Mtr7g2158 782 MobiDBLite consensus disorder prediction 462 485 - -
Mtr7g2158 782 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 782 - -
Mtr7g2158 782 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 344 IPR000504 GO:0003723
Mtr7g2158 782 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 375 433 IPR000504 GO:0003723
Mtr7g2158 782 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 264 IPR000504 GO:0003723
Mtr7g2158 782 MobiDBLite consensus disorder prediction 750 782 - -
Mtr7g2158 782 MobiDBLite consensus disorder prediction 697 729 - -
Mtr7g2158 782 SMART rrm1_1 195 268 IPR000504 GO:0003723
Mtr7g2158 782 SMART rrm1_1 374 449 IPR000504 GO:0003723
Mtr7g2158 782 SMART rrm1_1 277 356 IPR000504 GO:0003723
Mtr7g2158 782 Coils Coil 60 80 - -
Mtr7g2158 782 SUPERFAMILY RNA-binding domain, RBD 275 432 IPR035979 GO:0003676
Mtr7g2158 782 MobiDBLite consensus disorder prediction 90 162 - -
Mtr7g2158 782 Gene3D - 369 455 IPR012677 -
Mtr7g2158 782 MobiDBLite consensus disorder prediction 697 723 - -
Mtr7g2158 782 CDD RRM_SF 196 267 - -
Mtr7g2158 782 PANTHER RNA RECOGNITION MOTIF 1 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2158 Mtr-Chr7 37738645 37744013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2158 196 441 Eukaryotic Initiation Factors Gene Family AT1G71770 22.481 1.95e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2158 - - gmx:100811387 837.795