LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr7g2094	ATGCCATCTCCCACCACCGGGAGTTTCGCCATGCTTCCACCTCTCACTTATAAAGGATCAATGCTCACTTCTGTCAAACATGAACAAGAGAACGTGGATGTGCCTACCGCCTCCGATTTTGCTGCCTCTTTCAATTTCAAGCATCAAGCTAACTTGGATGCTGATTCTTTATCTCCATATTTTGCTTCTCTAAATCAGGTTTCTAATAATCGCCACATGATGAATGGAGGAGGACATAGAGACGGCCAAATGCTTGTTCAAGGTCAACAACTGTTAGATTTTTCATTCCCACAAGGTTTTTCAAGTGAATATTTAGCTAGAAATAGTGGAGTCCATTTCTACAATGATGTGAAAATGGTAGATGACGTGATTGTCAATACCAATAATGTTGACATACCCATATCTCGTTCCGAAGAAGCTAGCGATGAAAGCACTCTGCCTGAAAATTCTATCCACAGCGAGGATATCGGACAACATCATGTCTTAGAAGCAGAACAGAAAGAGATGTCTCATGCAGCAGGAGCAAAGACCTCAGAGGATGGTTATAATTGGAGAAAATATGGCCAAAAACAAGTAAAAGGTAGTGAATATCCGAGAAGCTACTACAAATGTACTCATTCTAATTGTCAGGTCAAGAAAAAGGTGGAAAGATCACACGATGGCCACATAACAGAAATTATTTACAAGGGTAATCATAACCATGCAAAACCACATTCAAGTCGCCGAGGATCAGTACCTTCTAGTGATGAGATATCAGAAAATGCTGAAGCCAATGAAACATGTGATAGAGTTGATGCTGATTCGGTATGGGGAAACATTCAGTCATGGGGGAAAGATGCAAAACACAATCCGGAACGGAAGCCTGATGGTCAAGAAAGGACATCCCCGCCTTCTGGTGTGACCGAGCTTTCAGATCCTATGAAGAGAGCTAGATCTCAAGGTATGTTTGAATCGGACAACGCTCCGGAGCATTCTTCAGCACTTGGTAATCATGATGGTGATAAAGATGGAGCCACTCAAGCAGTCCTATCACCTGAAAACAATCCTGAAGATGCCGATTCAGAATCGAAAAGAAGGAAGAAGGAGAGCTACCCGGTTGAAACAATGGTGCCTCCGAGGGCTGTTCGTGAGCCACGAGTGGTAGTCCAAATTGAGAGTGACATCGACATACTTGATGATGGTTATCGCTGGCGAAAGTATGGACAGAAGGTTGTCAAAGGGAATCCAAACCCAAGGAGCTACTACAAATGCACAAGTGCTGGATGTACTGTAAGGAAACATGTGGAAAGGGCTTCACACAATCTAAAGTATGTTCTTACAACTTATGAGGGAAAACATAACCACGAGGTTCCCGCTGCTAGAAATAACAATCATATAAGCTCAAGTGATGTTGGTTTATCTTCTACTTGTGCTAATGTCATACCTGGGAGTGCCGTTATCCCAAAATCTGAAACTCATCAAACTCTTCCATCTCATTTCGATAGAAAACCTGAATTTAGCAATGATTTCCTGAGATCAAGTTTGATGGGAAATTTCAGTAATGATATGAAGTTTGGACCTTCCTCCATATCTCAAATGAATTACTCTTCCTTGAATAATATCATACCTTATGGCGCCTATGGAACGAGCCCTGACCATGTTGCTGTGCCTCAAACAGGACCTATTGCTTCAATGTTCCCTGAATTTCAAATGCCGCTACCGCTGAATCTTCCCTCGTCTGGAAATTATGCTCTAGCTGGAATTAATTTTAACTATGCAAGACCTATGAGTTCTATTCAGTCTTATCTTTCAGGACAGCAGTTGAGGGATATGGATACAGGATTCTTAAGGCCTAAACAGGAGGTGAAGGAAGAATCTTCATATGCTGCATGTGCACCTTCTCTTGATCATGCAAGTACCTCACACACTCCACCATATGCTGCATGTGCACCCTCTCTTGATCATGCAAGTACCTCACACACTCCACCATCACCATCACAATCCATCTATCAATGTGTCATGCAAAATTTCCCTTCATAA	2019	0.422	MPSPTTGSFAMLPPLTYKGSMLTSVKHEQENVDVPTASDFAASFNFKHQANLDADSLSPYFASLNQVSNNRHMMNGGGHRDGQMLVQGQQLLDFSFPQGFSSEYLARNSGVHFYNDVKMVDDVIVNTNNVDIPISRSEEASDESTLPENSIHSEDIGQHHVLEAEQKEMSHAAGAKTSEDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCQVKKKVERSHDGHITEIIYKGNHNHAKPHSSRRGSVPSSDEISENAEANETCDRVDADSVWGNIQSWGKDAKHNPERKPDGQERTSPPSGVTELSDPMKRARSQGMFESDNAPEHSSALGNHDGDKDGATQAVLSPENNPEDADSESKRRKKESYPVETMVPPRAVREPRVVVQIESDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHNLKYVLTTYEGKHNHEVPAARNNNHISSSDVGLSSTCANVIPGSAVIPKSETHQTLPSHFDRKPEFSNDFLRSSLMGNFSNDMKFGPSSISQMNYSSLNNIIPYGAYGTSPDHVAVPQTGPIASMFPEFQMPLPLNLPSSGNYALAGINFNYARPMSSIQSYLSGQQLRDMDTGFLRPKQEVKEESSYAACAPSLDHASTSHTPPYAACAPSLDHASTSHTPPSPSQSIYQCVMQNFPS*	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr7g2094	672	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	1	626	IPR044810	GO:0003700
	Mtr7g2094	672	PANTHER	WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1	1	626	-	-
	Mtr7g2094	672	SMART	WRKY_cls	178	236	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mtr7g2094	672	SMART	WRKY_cls	391	450	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mtr7g2094	672	Gene3D	WRKY domain	164	238	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mtr7g2094	672	ProSiteProfiles	WRKY domain profile.	386	451	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mtr7g2094	672	SUPERFAMILY	WRKY DNA-binding domain	384	451	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mtr7g2094	672	MobiDBLite	consensus disorder prediction	228	371	-	-
	Mtr7g2094	672	MobiDBLite	consensus disorder prediction	350	366	-	-
	Mtr7g2094	672	SUPERFAMILY	WRKY DNA-binding domain	175	237	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mtr7g2094	672	MobiDBLite	consensus disorder prediction	240	254	-	-
	Mtr7g2094	672	ProSiteProfiles	WRKY domain profile.	173	237	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mtr7g2094	672	Gene3D	WRKY domain	378	444	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mtr7g2094	672	Pfam	WRKY DNA -binding domain	392	449	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mtr7g2094	672	Pfam	WRKY DNA -binding domain	179	234	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr7g2094	Mtr-Chr7	37170884	37174590	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr7g2094	2	454	WRKY Transcription Factor Family	AT5G56270	41.845	1.91e-90	294

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Mtr7g2094		WRKY	8.6e-24	CL0274