Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2060 ATGTCCTCTCCACATAGTTTCTTCACCAACCTTGGCCTTGGCTACTCCATAGCCATAACCCTAGCTTTTCTCGTCCTCCTCGCCACTCTCATCCTCTCTTTCTACCTTTGTTGCCGCAAAAACAACAATCCCAACAACAATCTCAACAACAACACTAACACTCTCAACTACACAGAGGGTGTCATTGTACGAACTGACATATTCATAGCTGAAAACGATGAAGAAAACGCAGTGGTGGGTCTAGAAGACAACATGATAAATTCGTATCCGAGGTTTCAGTTCAGCAGAGACAGCGCAACTGTTTTAGGACAGAACACCACGTGTTCCATTTGTTTGTGTGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCTGAATGTCGTCATTACTTTCATCTATGTTGTCTTGATTCATGGTTGAAGCTTAATGGCTCTTGTCCCGTTTGTCGAAACTCCCCGCTTCCGACGCCGCTTTCTACTCCGCTTCAAGAGGTTGTTCCGCTTTCGCAGTATGCTGCTGATCGGAGACGGAGGAGGTGA 540 0.463 MSSPHSFFTNLGLGYSIAITLAFLVLLATLILSFYLCCRKNNNPNNNLNNNTNTLNYTEGVIVRTDIFIAENDEENAVVGLEDNMINSYPRFQFSRDSATVLGQNTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRRR* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2060 179 SUPERFAMILY RING/U-box 107 155 - -
Mtr7g2060 179 SMART ring_2 108 149 IPR001841 -
Mtr7g2060 179 PANTHER RING-H2 FINGER PROTEIN ATL67 3 178 IPR044289 GO:0016567|GO:0016740
Mtr7g2060 179 Pfam Ring finger domain 107 150 IPR001841 -
Mtr7g2060 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Mtr7g2060 179 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Mtr7g2060 179 PANTHER RING-H2 FINGER PROTEIN ATL67 3 178 - -
Mtr7g2060 179 CDD RING-H2_PA-TM-RING 107 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2060 Mtr-Chr7 36841456 36842441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2060 9 169 C3H Transcription Factor Family AT5G07040 37.888 5.64e-34 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2060 - - lja:Lj1g3v2807930.1 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2060 7 36841456 36842441 Mtr7g2060 7 36841456 36842441 ECH
Mtr7g2060 7 36841456 36842441 Mtr8g0882 8 10868025 10869063 PCT