Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2028 ATGGAAGAAACAGAAGAGAGGGAGGAAAATGTAGAACCAGAACCAAACAACCCGGAAAATGAGAATGAAGAAGAATGCAACGCTGTGGTGGTGGTGGAGGAGATCCAAGGACTCATCGAATCGGTGGTTCAATTCGGTGAATACAGAAGAACACAAAGGAAAGAATCACACAACCTCGCTCGTCGTTTCAAACACATGTTGCCTCTTATGGAAGACCTTCGTGACCTTTGTCATCCTGCTCCTCGAAAAGGCGTTGTTTGGTTGAAGAACCTCAGAGATGCGCTTTTCTTCGCTAGGGAATTGTTGAAATTGTGTAGCCAAGGAAGCAAAATTCACCTCGCATGGGAAGGTGAGATGGTTATGATCAAATTTCAGAAGGTTTATGAAAAATTAAGTCAAGCTTTTGATGGTGTGCCTTGTGATGAATTAGGGATTTCTGATGAAGTAAAAGAACAGCTTGAGCTAATGCACGTGCAACTCAGGAGGGCAAGGAGAAGAACTGATACACAAGACATAGAGCTAGCAATGGATATGATGGTGGTGTTCTCTGATGAAGATGATCGTAATGCCGATAGTGCCATTATCGAAAGGCTTGCAAAGAAGTTGGAGCTTCGTAGTGTTGAGGATCTTGAGGTAGAAACAGTGGCTGTTGGAAACCTTGTTAGAGAAAGAAAAGGGAAGCAAAGTGAGAGTACAAAAAAAATAATTGACCTTCTTAACAGATTCAAAAGGACTGCAGGCATGGAAGAAACCGATGTTGTCTTTGACGATGATCATGCCATGCCTAATAAGATGCTTGGAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTGTGTCCTATAACACTTGAAATTATGTCTGATCCTGTTATTATTGCAAGTGGCCAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCCAATCACAAAACCTGCCCAAAGACAAGGCAGCCTTTGGAACATCTTCAGTTAGCACCAAACTGTGCCTTAAGAAATTTAATTGCTGAATGGTGTGAGAACAACAATTTCAAACTTCCAAAAATCTGCTCTTCGTGTCAAGAAACCACTCCAACCGAAAACCAAGAAGAAATTCCATGTTTGGTTGAAAGCCTATCGTCAATCAACTTAGAACATCAAAGAAAGGCAGTCGAGAGAATCCGCCTGTTATCAAAAGAGAATTCAGAGAACAGAATTTTAGTCGCCGAAAACGGAGGAATACCACCATTAGTACAAATCCTATCATATCCAGATTCAAAAATAAAAGAACATGCTGTTACAGCACTTTTGAACTTATCAATTGATGAAGCTAACAAAAAACTTATATCAAAAGAAGGTGCTATTCCAGCTATAATAGAAGTATTGGAAAATGGAAGTATTGTGGCTAAAGAAAACTCTGCAGCAGCTTTATTTAGCTTATCAATGATTGATGAAAATAAAGAGGTTGTAGGAATGTCAAATGGGATTCCAGCTTTGGTAAATTTATTACAAAATGGAACAGTTAGAGGGAAAAAAGATGCTGCTACAGCACTTTTTAGCTTATCATTAACCCATGCAAATAAAGAGAGAGCTATAAAAGCTGGAATTGTGACAGCTTTACTTCAATTGTTAAAGGACAAAAACTTGGGAATGATTGATGAAGCACTTTCTATTTTGTTGCTACTTGTGTTGACTCCTGAAGGGAGACATGAGGTTGGACAATTATCATTTATTGAAACTCTTGTTGAGTTTACTAGAGAAGGGACTCCAAAGAACAAAGAATGTGCAGCTTCTGTTCTTCTTGAATTGTGTTCAAGTAATTCATCTTTTACTTTGGCAGCACTTCAGTTTGGAGTTTATGAACATTTGATTGAGATTAAAGAAAGTGGTACAAATAGAGCACAAAGGAAAGCAAATGCAATTTTAGATCTCATAAAAAGGAGTGAGCAAATTTAA 1941 0.3859 MEETEEREENVEPEPNNPENENEEECNAVVVVEEIQGLIESVVQFGEYRRTQRKESHNLARRFKHMLPLMEDLRDLCHPAPRKGVVWLKNLRDALFFARELLKLCSQGSKIHLAWEGEMVMIKFQKVYEKLSQAFDGVPCDELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDEDDRNADSAIIERLAKKLELRSVEDLEVETVAVGNLVRERKGKQSESTKKIIDLLNRFKRTAGMEETDVVFDDDHAMPNKMLGRSTSLVIPHEFLCPITLEIMSDPVIIASGQTYERESIEKWFKSNHKTCPKTRQPLEHLQLAPNCALRNLIAEWCENNNFKLPKICSSCQETTPTENQEEIPCLVESLSSINLEHQRKAVERIRLLSKENSENRILVAENGGIPPLVQILSYPDSKIKEHAVTALLNLSIDEANKKLISKEGAIPAIIEVLENGSIVAKENSAAALFSLSMIDENKEVVGMSNGIPALVNLLQNGTVRGKKDAATALFSLSLTHANKERAIKAGIVTALLQLLKDKNLGMIDEALSILLLLVLTPEGRHEVGQLSFIETLVEFTREGTPKNKECAASVLLELCSSNSSFTLAALQFGVYEHLIEIKESGTNRAQRKANAILDLIKRSEQI* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2028 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 339 IPR013083 -
Mtr7g2028 646 Coils Coil 146 166 - -
Mtr7g2028 646 CDD RING-Ubox_PUB 278 320 IPR045210 -
Mtr7g2028 646 Pfam Armadillo/beta-catenin-like repeat 396 435 IPR000225 GO:0005515
Mtr7g2028 646 Pfam Armadillo/beta-catenin-like repeat 479 517 IPR000225 GO:0005515
Mtr7g2028 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 489 531 IPR000225 GO:0005515
Mtr7g2028 646 SMART arm_5 560 600 IPR000225 GO:0005515
Mtr7g2028 646 SMART arm_5 396 436 IPR000225 GO:0005515
Mtr7g2028 646 SMART arm_5 519 559 IPR000225 GO:0005515
Mtr7g2028 646 SMART arm_5 437 477 IPR000225 GO:0005515
Mtr7g2028 646 SMART arm_5 478 518 IPR000225 GO:0005515
Mtr7g2028 646 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Mtr7g2028 646 MobiDBLite consensus disorder prediction 1 24 - -
Mtr7g2028 646 PANTHER U BOX DOMAIN-CONTAINING 23 644 - -
Mtr7g2028 646 Gene3D - 465 645 IPR011989 -
Mtr7g2028 646 Gene3D - 27 139 IPR036537 GO:0007166
Mtr7g2028 646 SUPERFAMILY RING/U-box 273 350 - -
Mtr7g2028 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 448 490 IPR000225 GO:0005515
Mtr7g2028 646 MobiDBLite consensus disorder prediction 1 21 - -
Mtr7g2028 646 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Mtr7g2028 646 Gene3D - 340 464 IPR011989 -
Mtr7g2028 646 Pfam U-box domain 274 344 IPR003613 GO:0004842|GO:0016567
Mtr7g2028 646 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 23 644 - -
Mtr7g2028 646 SUPERFAMILY ARM repeat 365 637 IPR016024 -
Mtr7g2028 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 407 449 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2028 Mtr-Chr7 36382564 36385896 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2028 31 646 U-box Gene Family AT5G42340 61.551 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2028 - - cam:101489704 1033.48