Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2016 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACATCATTTGCAAGGAACACCAGTTTATTACTATTGCCCGCCAACTTTTGAAGAACGTGAGTCTTTAACCTCCAATGACGCTACCACTGCTTCGATCTCTGCTGGATTTCTGGTTGGCTTGAACCTGGAAGCATCCATACCTGATACATTCCGGTCTCCTCCCGTGCCTCTTCCTTATGACATTGTCTTCGGGGGTTCTGCATCACCTGATTCCGAGTCTTGCAAAGAAACTGTCAGTTTTAGTAGCTTCGAAACCTCAATTACACACGATGATATTGAAGAATCAGATTGTAAAACTCAAGAAAAATCTGCATCTCTATCTCCAAGGAAGGTAGAACTATCAAAATCAAATGGAATTCAAGTATTGGCAACAGAAGAAGAGGATGGCTGCCCTATTTGTCTTGAAGAATACGATGACGATAATCCGAAAAATCTGACGAAATGTGAACATCATTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCTTGTCCTATATGTGACCAGGAGATGATATTTTGA 561 0.4153 MGGCCCSARKHHLQGTPVYYYCPPTFEERESLTSNDATTASISAGFLVGLNLEASIPDTFRSPPVPLPYDIVFGGSASPDSESCKETVSFSSFETSITHDDIEESDCKTQEKSASLSPRKVELSKSNGIQVLATEEEDGCPICLEEYDDDNPKNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2016 186 SMART ring_2 140 180 IPR001841 -
Mtr7g2016 186 Pfam Ring finger domain 140 180 IPR001841 -
Mtr7g2016 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 186 - -
Mtr7g2016 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 185 IPR013083 -
Mtr7g2016 186 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Mtr7g2016 186 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 186 - -
Mtr7g2016 186 SUPERFAMILY RING/U-box 135 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2016 Mtr-Chr7 36280162 36283490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2016 1 186 C3H Transcription Factor Family AT4G00335 56.989 1.68e-72 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2016 - - gmx:100812687 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2016 7 36280162 36283490 Mtr8g0918 8 11254124 11260184 PCT