Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1990 ATGGGTAATATTCATATTCGTGCTTATGGCGATTTTAATTCTTCTGAGGTCGACAAAGAGGCTCTTAATTCAACAAACATTTCTCTACACGGATCCATTACCGAATTAAATACCGTTGGAAAGAACAATAGGTATAAGCATTTTCTTATGGATCTTAATGATTGGGTTTCCGCAAATCCTCCACCCGTACACCTCTTTTTGATATTTGGTAGTAAAGAATTCTCTAGTAGTGGCATATTGCACCGGTTAAGAATGTGCAACTACAATATCTTGCTTGCATGTCCAGGAATGCCTCATGTTGCTCTTTGCCATGCACCAACTATAATGTGGGACTGGTCTTCGTTGCTCAAGGGGGAAGACCTTACAGGAAAACATTTCAACCATCCTCCTGATGGTCCAACTAATTCACGGTATGGAAACTCAAACGTGCCTCTTGAAAACCCCTTCTCACTTGTTGATTTTCACACATCTTCACAAAATGCGGAGGAGATCTACAAACCTACCTTGGACATAAAGTTATGTGAAGCTTCAAAGTCAGTTTCTAGGCAGGTTATGAAAATATTGTGTTCGCACCCAAATGGGATCTCCATCGGAGATCTTCGTGCAGAGTTGACAAAGTGTGATCTGCCTTTGGATAAACGCTTCTATGGAAATAAAAAGTTTTCCGACTTTCTAGTATCTATGTCATATGTACAACTCCAATATTTAGGAGGAGGTAATTTTTGGGTGCGCTTGGTCCCATCAACTACATCTGCTGTTAAGAATAAGCAGAAAGATTGTGTCCTAACTCAAAATCTACATGATGAGGGTAAAAATATGGATAGAAGTGCAGATGGGGTTCCCAGAATATCCTCATCGTGTGTTAGCTGCGAGGGTGATGATCTAAAATCATTTCAATTTCTCCCTTCACAAGGAAATCCTCTTGGGGAATATGCGGATGGTAAACCATCATTTCCTTCGTTAGAAAGTAATGTGCATCGGCCTCCAGATGAGTTGCAGAAAAAATCTCTGGAGGTGGATGTGACTCATGCACCATTGCTGCAGATTCAACTTCCTCCAAATGACAGCAATATTTCCAAAAAATCTGACAATGACATTGTTAAGTCTGATGATGTAAATCCTGAAATTATGGAAAAAATAAACCCTTCAAAGAATCCCTCTACCTGTAATGATTGCAACATGTTGCAAAACAAACATGAGATTCCAACTACAAAGGAGGTTGATGAAGTTTGTTGTAGCCCATTTACTTCAACTTTTGGTAGTTGGATTAGTAGTTGGTGGACATTTTGGAGAAGCAATGCTAAGTCCGAAGTATACGAGAGTGCTAGTCATTTTGAAGAATCCAAGTCATCAGGATTGCAATATGATCTTTGTCATCCTCAGCAACCTTATTGGGATAACTTTAAATGTAGGGTTTCCGTATGGTGGGACTTTGACAGCTGTGCCGTCCCTTCCGACATTAGCTTTTTGAATGTAGCACCTTCAATTATGGGAGTTCTTAGAGCTAACGAGATTAAGAGCCCTATTTGTATTGACACATATGGCGATGTTTCTCAACTTTCAAAGATCAAACAAGAAGCACTTTTCTTATCCGGCATTGATCTCCACCACATTCCAGGTGGAAAGAACAAGAACAAATGTTTAATGGATTGGCTTTCTCAAAATCCCCCACGCAGACATCTCTTTTTGATATTTGGTGACAAAGACTTCTACTTCTCCGGCACATTACGTCGGAATGACAACTTTTTGCTTGCATGTCCAGGAAAAGCTGATGGTTATATCTGCAAAGTAGCAACTATAGTGTGGCAGTGGTCTTCAGTGCTCAAGGGGAAATATCTTACTGGAAAATATTTCAACCATCCTCCTGATTGGTATATTAGGAAGCGGGAGCAGACGCCTCTTGAATATCCTCCCGAGTGGTATAGAAACTCGAAGGTGCCTCATGAAAACCCCTTCTCAGCTGCTGAGGAACCCACATCTTCACAAAATGCAAAGATCCTCGATCCTTCATCGTACATAAAATTAATTTATGTTCAACAGTCGGTTTCTAGGAAGATTAGGAAGGTATTGAGTTCGTACCCGAATGGGATCTCCATTGGAGATCTTACTTTCCATTTGGGAGATTGTTTTGGTAGAGGCTTACCTGATCGTAAAAAGCTTTCCAACATTCTAGCATCTATACCAGATGTACAACTCTTGTATATAGGAGATGATAATTTTTGTGTACGTTTGATGCCATCAACAACATCTAATGCTGAGGAGAAGAATGAGCAGAGGGATGTTAATCATTCAAGAAGTCCTGTGTTATTTTCTACTGATTCCTTTTGGGATGAAGTGGAATCTTTTGTTTTCACGTCTAGAGGATCACGTCAAATTTCCCGGTCAACAAGCAGGGAGGATCTGGCTCATAGATTACAAAAGCATGGAGGATTTTTTAAGTTTCGCACTAAAAATAAAATCCTTCAATTGGTTGAATTGTTGATAGCAGAGAAGAAATGGTTGGAGGAAAACCCCTCACAAGCACTTCCTTTTAGGGTAACTAAATCAGTTCAGAAGAGCTAA 2562 0.3997 MGNIHIRAYGDFNSSEVDKEALNSTNISLHGSITELNTVGKNNRYKHFLMDLNDWVSANPPPVHLFLIFGSKEFSSSGILHRLRMCNYNILLACPGMPHVALCHAPTIMWDWSSLLKGEDLTGKHFNHPPDGPTNSRYGNSNVPLENPFSLVDFHTSSQNAEEIYKPTLDIKLCEASKSVSRQVMKILCSHPNGISIGDLRAELTKCDLPLDKRFYGNKKFSDFLVSMSYVQLQYLGGGNFWVRLVPSTTSAVKNKQKDCVLTQNLHDEGKNMDRSADGVPRISSSCVSCEGDDLKSFQFLPSQGNPLGEYADGKPSFPSLESNVHRPPDELQKKSLEVDVTHAPLLQIQLPPNDSNISKKSDNDIVKSDDVNPEIMEKINPSKNPSTCNDCNMLQNKHEIPTTKEVDEVCCSPFTSTFGSWISSWWTFWRSNAKSEVYESASHFEESKSSGLQYDLCHPQQPYWDNFKCRVSVWWDFDSCAVPSDISFLNVAPSIMGVLRANEIKSPICIDTYGDVSQLSKIKQEALFLSGIDLHHIPGGKNKNKCLMDWLSQNPPRRHLFLIFGDKDFYFSGTLRRNDNFLLACPGKADGYICKVATIVWQWSSVLKGKYLTGKYFNHPPDWYIRKREQTPLEYPPEWYRNSKVPHENPFSAAEEPTSSQNAKILDPSSYIKLIYVQQSVSRKIRKVLSSYPNGISIGDLTFHLGDCFGRGLPDRKKLSNILASIPDVQLLYIGDDNFCVRLMPSTTSNAEEKNEQRDVNHSRSPVLFSTDSFWDEVESFVFTSRGSRQISRSTSREDLAHRLQKHGGFFKFRTKNKILQLVELLIAEKKWLEENPSQALPFRVTKSVQKS* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1990 853 ProSiteProfiles OST-type HTH domain profile. 176 247 IPR025605 -
Mtr7g1990 853 PANTHER LIMKAIN B LKAP 762 853 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr7g1990 853 PANTHER LIMKAIN B LKAP 461 760 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr7g1990 853 PANTHER LIMKAIN B LKAP 2 461 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr7g1990 853 ProSiteProfiles OST-type HTH domain profile. 678 746 IPR025605 -
Mtr7g1990 853 Pfam NYN domain 471 570 IPR021139 GO:0004540
Mtr7g1990 853 CDD PIN_limkain_b1_N_like 471 587 - -
Mtr7g1990 853 CDD PIN_limkain_b1_N_like 2 95 - -
Mtr7g1990 853 Pfam OST-HTH/LOTUS domain 178 242 IPR025605 -
Mtr7g1990 853 Pfam OST-HTH/LOTUS domain 681 731 IPR025605 -
Mtr7g1990 853 PANTHER EMB|CAB71880.1 762 853 - -
Mtr7g1990 853 PANTHER EMB|CAB71880.1 461 760 - -
Mtr7g1990 853 PANTHER EMB|CAB71880.1 2 461 - -
Mtr7g1990 853 Gene3D - 671 751 IPR041966 -
Mtr7g1990 853 Gene3D - 170 252 IPR041966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1990 Mtr-Chr7 35972477 35977480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1990 466 610 C2H2 Transcription Factor Family AT5G61190 36.306 8.37e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1990 - - mtr:MTR_7g077430 1774.6