Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1962 ATGGAACTTGGTTTTCTTGAGGAGCTACTAGCTCCAAGAAAAGACACATGGAATACTTTATCCAATGGTTTGAATGAGTTACTACTCCCTAATGGTTGGACCTTTGACTCATTTGATGAAAATCTTCTCATCAATCCATCTTTAAACCCTTCATTTGCTTCATTCTCAACACCATTAGACCATAGATTTGAATGTCCTTATGGAACTGATGCATCATCATATCCTTATCTATCTGATTGATTCTCAGTTCCTGAGTTTGATGATTCAGCACCACTTTTACCACAACAAGAAAGTATTGAAGAGTTTGGATTTGTTGGAAGTGAGAACAAGAGTTTGGAACAAAGTAAAATCAGCTGCAAAGTTGAGGAACAAGTTAGTGAGACTCCAGTTTTTAACATGGGTTTGTGTGATGAGAAAAAAGCCAAATCCAAAAGGGTTGAAAGGAGAAGAAGAAAGCGTTTGAATGACAGGCTTTCCATGCTTAGGTCAATTGTACCTAAGATCAGCAAGGTGATTCAATATATATAA 528 0.3674 MELGFLEELLAPRKDTWNTLSNGLNELLLPNGWTFDSFDENLLINPSLNPSFASFSTPLDHRFECPYGTDASSYPYLSD*FSVPEFDDSAPLLPQQESIEEFGFVGSENKSLEQSKISCKVEEQVSETPVFNMGLCDEKKAKSKRVERRRRKRLNDRLSMLRSIVPKISKVIQYI* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1962 174 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 174 IPR011598 GO:0046983
Mtr7g1962 174 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 169 - -
Mtr7g1962 174 PANTHER TRANSCRIPTION FACTOR BHLH61-RELATED 2 169 - -
Mtr7g1962 174 Pfam Helix-loop-helix DNA-binding domain 138 165 IPR011598 GO:0046983
Mtr7g1962 174 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 169 IPR036638 GO:0046983
Mtr7g1962 174 Gene3D - 132 172 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1962 Mtr-Chr7 35711346 35712055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1962 140 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G12860 71.429 2.89e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr7g1962 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1962 - - mtr:MTR_7g076840 283.878