LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr7g1960	ATGAACAATAACAATAGAGGGAGATATCCACCTGGGATTGGGTTAGGACGAGGTGGTGGTGGTGGTTTGACCTCGAACTCGAACACCGGGTTTCAACAGAGACCACATCATCAATATCAACAACAACAACAGTATGTGCAGAGGCACATGATGCAAAATCAGCATCAGCAACACTATCAGAATCAACAACAGAATCAACAGCAGAATCAACAGCAGCAGCAACAACAACAGTGGTTGAGGAGGAACCAGTTGGGTGGTGGCACCGACACCAACGTTGTCGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCAAATGACTCTAGTTCACAAGATTGGAAGGCAAGACTAAAGCTTCCACCAGCTGATACACGCTATAGAACAGAGGACGTGACAGCAACTAAGGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGCTGCTAATGGGAATATACGAGAAGGGGTTTGAAAGGCCTTCCCCTATCCAAGAAGAAAGCATTCCAATTGCCCTTACTGGCAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCATTTAGCATTCCTGCATTGGAAAAAATTGATCAAGATAACAATATTATTCAAGTTGTTATACTGGTTCCAACACGAGAATTGGCTCTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAACATTTACAAATTCAAGTTATGGTCACAACAGGTGGTACCAGTCTGAAAGATGACATTATGCGTTTATATCAACCTGTTCATCTGCTAGTTGGTACTCCCGGAAGAATATTGGATCTTGCAAAGAAGGGTGTCTGTGTTCTGAAAGATTGTTCTATGCTTGTCATGGATGAGGCTGATAAACTTCTCTCCCCAGAGTTCCAGCCTTCAATAGAGCAGCTGATTCAATTTCTTCCCCCAACCCGTCAAATCCTAATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCGTAAGCCATATATCATTAACCTTATGGATGAGCTAACCCTGAAGGGTATTACACAATTTTATGCATTTGTGGAGGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTTTCTAAGCTGCAAATAAACCAATCCATCATCTTCTGCAATTCGGTAAATCGAGTTGAACTCCTTGCTAAGAAAATCACTGAACTAGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTTTTCCACGACTTCCGCAATGGTGCATGCAGGAATCTCGTTTGTACTGATCTTTTCACTCGAGGAATAGATATCCAAGCAGTGAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACATATCTGCACAGGGTTGGTCGATCCGGGAGGTTTGGGCACCTCGGTTTAGCAGTGAACTTGATAACCTATGAGGATCGCTTCAATCTGTATAGGATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCACCATTCATTGACCAGGCTATATACTGTCGGTGA	1533	0.4175	MNNNNRGRYPPGIGLGRGGGGGLTSNSNTGFQQRPHHQYQQQQQYVQRHMMQNQHQQHYQNQQQNQQQNQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEANDSSSQDWKARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR*	511

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr7g1960	510	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	206	490	IPR027417	-
	Mtr7g1960	510	Pfam	DEAD/DEAH box helicase	161	325	IPR011545	GO:0003676\|GO:0005524
	Mtr7g1960	510	CDD	DEADc_DDX6	138	338	-	-
	Mtr7g1960	510	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	136	164	IPR014014	GO:0003724
	Mtr7g1960	510	Coils	Coil	56	76	-	-
	Mtr7g1960	510	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	167	337	IPR014001	-
	Mtr7g1960	510	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 6	4	510	-	-
	Mtr7g1960	510	Gene3D	-	94	340	IPR027417	-
	Mtr7g1960	510	CDD	SF2_C_DEAD	348	477	-	-
	Mtr7g1960	510	SMART	helicmild6	387	468	IPR001650	-
	Mtr7g1960	510	MobiDBLite	consensus disorder prediction	1	78	-	-
	Mtr7g1960	510	Gene3D	-	341	509	IPR027417	-
	Mtr7g1960	510	MobiDBLite	consensus disorder prediction	21	78	-	-
	Mtr7g1960	510	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	4	510	-	-
	Mtr7g1960	510	Pfam	Helicase conserved C-terminal domain	362	468	IPR001650	-
	Mtr7g1960	510	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	347	507	IPR001650	-
	Mtr7g1960	510	SMART	ultradead3	155	351	IPR014001	-
	Mtr7g1960	510	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	283	291	IPR000629	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr7g1960	Mtr-Chr7	35672991	35693498	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr7g1960	138	500	Eukaryotic Initiation Factors Gene Family	AT3G19760	39.178	4.18e-95	293

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr7g1960	K12614		-	tcc:18614173	836.639