Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1956 ATGTCATTCACTGGAACTCTCGATAAATGCAAGGCTTGTGACAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAGGTATACCTTACCATAAAAGTTGCTTGAAATGCACTCACTGCAAGGGAAATCTTACGATGAGTACTTACTCCTCAATGGATGGTGTCCTCTATTGCAAGCCCCATTTTGAACAACTTTTCAAGGAATCTGGAAATTTCAGCAAGAACTTTCAAGCAAAGTCTTCTGAGAAGATAAATGAGTTGATGAACAGGACACCCAGCAGACTCTCCTCTATGTTCAGTGGAACTCTAGACAAATGTGCAGTTTGCACAAAAACTGTTTATCCTTTGGAAAAGATGTCATTGGAAGGGGAATGTTACCACAAGAATTGCTTTAGGTGTGCTCATGGAGGTTGCCACCTTACACATTCTTCCTATGCTGCACTAGATGGTGTCCTCTATTGCAAGCATCATTTTCAACAGCTTTTCATGGAGAAAGGAAACTACAATCATGTGCTTCAAGCTGCTGCAAACAAAAAGAATTCCACTCCACCACCTGAACCGGCTGATGAGGAAGAACCATCAAAACCAGAAGAAACTGAGGCACAGGCAGAAGAAAAGTCTGAAACAGCAGAAACATGA 639 0.4116 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKSCLKCTHCKGNLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQAKSSEKINELMNRTPSRLSSMFSGTLDKCAVCTKTVYPLEKMSLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFQQLFMEKGNYNHVLQAAANKKNSTPPPEPADEEEPSKPEETEAQAEEKSETAET* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1956 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Mtr7g1956 212 Pfam LIM domain 10 65 IPR001781 -
Mtr7g1956 212 Pfam LIM domain 106 161 IPR001781 -
Mtr7g1956 212 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Mtr7g1956 212 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Mtr7g1956 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 172 - -
Mtr7g1956 212 Gene3D Cysteine Rich Protein 5 98 - -
Mtr7g1956 212 PANTHER OS06G0237300 PROTEIN 1 208 IPR045268 GO:0051015
Mtr7g1956 212 SMART lim_4 105 157 IPR001781 -
Mtr7g1956 212 SMART lim_4 9 61 IPR001781 -
Mtr7g1956 212 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Mtr7g1956 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Mtr7g1956 212 Gene3D Cysteine Rich Protein 102 170 - -
Mtr7g1956 212 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 208 - -
Mtr7g1956 212 MobiDBLite consensus disorder prediction 175 212 - -
Mtr7g1956 212 CDD LIM1_SF3 6 68 - -
Mtr7g1956 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1956 Mtr-Chr7 35640256 35641829 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mtr7g1956 LIM 7.2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1956 - K09377 gmx:100788569 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1956 7 35640256 35641829 Mtr7g1956 7 35640256 35641829 ECH
Mtr7g1956 7 35640256 35641829 Mtr8g0973 8 11864691 11866626 PCT