Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1905 ATGGGTAGAGGGAGGGTTGAACTGAAGAGGATAGAAAACAAAATCAACCGGCAAGTTACTTTCTCAAAAAGAAGAAATGGTTTGCTGAAAAAAGCCTATGAACTCTCAGTTCTATGTGATGCTGAGATTGCTCTTATCATTTTCTCAAGTCGTGGAAAGCTTTCTGAATTTGCAAGTTCAACTTCAGGCATTGGCAAAACCCTGGAACGATATCAGAGATGCTCTTTCACTTCTCAAAATGATAATGTTAATGAACATGAAACTCAGAACTGGTACCAGGAGATGTCAAAGCTAAAGGCAAAGTATGAGTCACTTCAAAAGTCACAAAGACAATTGCTAGGGGAAGATCTTGGACCATTGAACATGAAAGAGCTACAAAATCTTGAGAAGCAACTTGAAGGAGCTTTAGCACAAGCTAGGCAGAGAAAGACACAGATTATGGTTGAACAAATGGAAGAGCTTAAGAGAAAGGAACGCCATCTTGGAGACATAAATAAGCAACTTAGGTTCAAGCTTGAATCAGATGGATTTAATCTTAAAGCTATTGAAAGCTTGTGGAGTTCTACTCATTCTGCTACTGCTGTTGCTGGAGGAGGCAACTTTCCTTTTCAGCCTTCTGAAACCAATCCCATGGACTGCCAAACTGAACCTTTCTTGCAAATAGGGTACCAAAACTATGTTCAAGCTGAAGCATCCAGTGCTCCAAAGAACATGGTTGGTGAGACTAGCTTTATCCAAGGATGGATGCTATGA 753 0.4024 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLSEFASSTSGIGKTLERYQRCSFTSQNDNVNEHETQNWYQEMSKLKAKYESLQKSQRQLLGEDLGPLNMKELQNLEKQLEGALAQARQRKTQIMVEQMEELKRKERHLGDINKQLRFKLESDGFNLKAIESLWSSTHSATAVAGGGNFPFQPSETNPMDCQTEPFLQIGYQNYVQAEASSAPKNMVGETSFIQGWML* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1905 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr7g1905 250 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Mtr7g1905 250 PANTHER MADS BOX PROTEIN 1 236 - -
Mtr7g1905 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr7g1905 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr7g1905 250 Coils Coil 147 167 - -
Mtr7g1905 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr7g1905 250 Coils Coil 95 115 - -
Mtr7g1905 250 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Mtr7g1905 250 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mtr7g1905 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr7g1905 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr7g1905 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr7g1905 250 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr7g1905 250 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr7g1905 250 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 236 - -
Mtr7g1905 250 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1905 Mtr-Chr7 35171949 35178667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1905 1 250 MADS-box Gene Family AT2G45650 64.062 1.14e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr7g1905 K-box 3.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1905 K09264 - tcc:18614251 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1905 7 35171949 35178667 Mtr7g1905 7 35171949 35178667 ECH
Mtr8g1082 8 13244488 13249330 Mtr7g1905 7 35171949 35178667 ECH
Mtr4g3667 4 50447964 50455552 Mtr7g1905 7 35171949 35178667 ECH