Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1897 ATGATCACAGTTCATAGAGCTTACAAGTTACAAGGCATGATGTCAGTCGAAATTATCGAGACCAGCGAGCAAGATCAAATAACTCCTGTGCCAGTAGAAGTTACTACCAATGAAGAAATCACTGAAGAGGAAGCAGTGTGCAGGATATGTCTTGATGTGTTCGATGAAAGAAATATCTTTAAAATGGAATGCAGTTGCAAAGGTGACCAGAGATTGGTGCATGAAGAATGTTTAATCAAATGGTTCAGCACAAAGCGAAACAAGAAATGTGATGTATGCTTGGCAGAGGTTCAGAATTTACCGGCAAACTTGGTCCATGAGTGCCGCTCTGTACAACCAAGAAACATACGATTAAGTGCTTGGCAAAACTTTGTAGTGCTTGTCCTGATAAGCACACTATGGTATTTTCACTTCATTGTAGATCTACTGTATCGTGATTTGAAGACTCGAGGTATCATTATAGCAGCAGCAGTTTCCTTTACATTGAGCCTCCTGGCATCTGTTTTTGCATTTTTCCTTGCAATCAGAGAGTATATGTGGCTATATGCTCTTCTTGAGTTTGGACTTGTGGATGCAACCTTCCTACTGTTTTATACTTTGTTGCATTTGGCGCCAATTTATTCCATACCACTTTCATCAGTTGTAGGTTTTGGAATTGCTATGGGAATCAACTATATGTATATCAAGCATGTGAATCGGAGACTTCAGGTCCCTACTAATGATATCCCAGTATGA 735 0.3973 MITVHRAYKLQGMMSVEIIETSEQDQITPVPVEVTTNEEITEEEAVCRICLDVFDERNIFKMECSCKGDQRLVHEECLIKWFSTKRNKKCDVCLAEVQNLPANLVHECRSVQPRNIRLSAWQNFVVLVLISTLWYFHFIVDLLYRDLKTRGIIIAAAVSFTLSLLASVFAFFLAIREYMWLYALLEFGLVDATFLLFYTLLHLAPIYSIPLSSVVGFGIAMGINYMYIKHVNRRLQVPTNDIPV* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1897 244 SMART ringv_2 46 94 IPR011016 GO:0008270
Mtr7g1897 244 ProSiteProfiles Zinc finger RING-type profile. 47 93 IPR001841 -
Mtr7g1897 244 PANTHER ZINC FINGER PROTEIN 20 244 - -
Mtr7g1897 244 Pfam RING-variant domain 47 93 IPR011016 GO:0008270
Mtr7g1897 244 SUPERFAMILY RING/U-box 43 97 - -
Mtr7g1897 244 CDD RING_CH-C4HC3_MARCH 47 93 - -
Mtr7g1897 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 103 IPR013083 -
Mtr7g1897 244 ProSiteProfiles Zinc finger RING-CH-type profile. 39 100 IPR011016 GO:0008270
Mtr7g1897 244 PANTHER OS02G0165000 PROTEIN 20 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1897 Mtr-Chr7 35112110 35115424 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1897 23 209 C3H Transcription Factor Family AT1G50440 28.351 8.18e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1897 - - mtr:MTR_7g075700 351.288