Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1896 ATGATGTCAGCAGAAATTACCGAGACCAGCGAGCAAGATCAAATAACTCCCGTGCCAGTAGAAGTCAGTACCAATGAAGAAATTACTGAAGAGGCAGCAGTGTGCAGGATATGTCTTGATGTGTTCGATGAAAGAAATATCTTTCAAATGGAATGCAGTTGCAAAGGTGACCAAAGATTGGTGCATGAAGAATGTTTAATCAAATGGTTCAGCACAAAAGGAAACAAGAAATGTGATGTATGCTTGACAGAGGTTCAGAATTTACCGGCAAACTTGGTCCATGTGTCCCGCTCTGTACAACTAAGAAACATACAATTAAGTGCTTGGCAAAAATTTGTGGTGCTTGTCCTGATAAGCACAATAGGCTATTTTAACTTCCTTGTAGATCTACTGTGTCCTGATCCGAAGACTCGATCCATCATTATACCAGCGGCAGTTTCCTTTACATTGAGCCTCCTAGCATCTGTTTTTGCATTTTTCCTTGCTATCAGGGAGTATATGGCGCTATATGCTCTTCTTGAGTTTGGACTTGTGGATGTAACTTTGCGACTGTTTTATACTTTGTTGCATTTGGCGCCAATTTACTCTGTACCACTTTCATCAGTCTTAGGTTTTGGAATTGCTATGGGAATCAACTATTTGTATATCAGGCATGCGAATCGAAGACTTCAGGTCTCTACTAATGATATCCCAGTATGA 699 0.4034 MMSAEITETSEQDQITPVPVEVSTNEEITEEAAVCRICLDVFDERNIFQMECSCKGDQRLVHEECLIKWFSTKGNKKCDVCLTEVQNLPANLVHVSRSVQLRNIQLSAWQKFVVLVLISTIGYFNFLVDLLCPDPKTRSIIIPAAVSFTLSLLASVFAFFLAIREYMALYALLEFGLVDVTLRLFYTLLHLAPIYSVPLSSVLGFGIAMGINYLYIRHANRRLQVSTNDIPV* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1896 232 PANTHER OS02G0165000 PROTEIN 6 232 - -
Mtr7g1896 232 ProSiteProfiles Zinc finger RING-CH-type profile. 27 88 IPR011016 GO:0008270
Mtr7g1896 232 SMART ringv_2 34 82 IPR011016 GO:0008270
Mtr7g1896 232 Pfam RING-variant domain 35 81 IPR011016 GO:0008270
Mtr7g1896 232 SUPERFAMILY RING/U-box 31 85 - -
Mtr7g1896 232 CDD RING_CH-C4HC3_MARCH 35 81 - -
Mtr7g1896 232 ProSiteProfiles Zinc finger RING-type profile. 35 81 IPR001841 -
Mtr7g1896 232 PANTHER ZINC FINGER PROTEIN 6 232 - -
Mtr7g1896 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 90 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1896 Mtr-Chr7 35099231 35103568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1896 35 88 C3H Transcription Factor Family AT5G05830 38.983 2.21e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1896 - - mtr:MTR_7g075700 431.795