Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1882 ATGGCATCGTCTCAAGAAAAACGACACCGTTCAATCTTCGAACTTCCATCAAACTACTTCGACTCGTGTCGTCTTCTTCCTTCTCCTCACTCTTCACTTCCCGACCACCACACCCAAACCCTTCAACCACCCTCAAACGACGCCGTTGATGATATTCAAAACGCCGTCGTTTCGGGTCCTAGATTGACCTGCAATACTTGCAAGGCTCACTTCGATTCTCTTCAAGATCAACGTTCGCACTTCAAATCAGATATTCATCGATTCAATGTGAAGCTGACAATTGCTGGAAAAAATATTGTGAAGGAAGAGGATTTTGAGGATTTGACATCTGATTTTGTCAAAGACTATGACGTGTCAAGTATATCTGGATCAGAAAGTGATGACGACGATGACAGTGAAAATGAGTCTCGTAGTCAAAATCTAGTGCCTAATAAATCAGGCATAAGCTTAAAACAAAAGCTATTTGTCTCTCTTCAGACAGGGCAAAGAGTTTCTGTATGGAAGTCTTTGATTATGAACGTGAGCGAAAATGTGGTGTATGAGGATGAGCAAGTGCAGAAAAATTTGGTGGAAAGGTTGAAATCTCTGACGGTTGAACCTAGTGATAAGACCCGTTTGAGGATCGTTCTGCTTGCATCTGGTGGGCACTTTGCTGGTTGTGTCTTTGATGGTGATACAGTTGTGGCTCATAAGACATTTCATAGATATGTTGTGAGGGCCAAGGCTGGAAAAAAACAGTCAGCTAAAGATGCTTCTGGCAGGACCGTACATTCTGCTGGTGCTTCACTTCGTCGCTACAACGAACTTGCATTAAAAAAGGAAGTTCACGAACTGCTTACTGCTTGGAGACCTTATTTTGATGCTTCCATTTGCATTTTTATACACGCACCTTCAAGTAGTCGCGAACTGCTTTATGATGGAGAAAAGCCATGTTTTACCAATCCGCAATGTGTTAGAAATATTGCTATGATTGTCCGCAGGCCAACTCTCAGAGAAGCAAAACGCATCTATGGCCAGTTGACCTTAGTATCCTATGAAGCAGATGAGAAGGAAATTTTACAAAGTAACCAACAGGACGGGGTGCCAATTCGCAAAGCTAAAAGAAATGGCGCCCCAACTGTGAGTAAAGTGGACATCGCTGGGTTGGATGAAAACGACAAAGCTGAAGTTTGTTCTAGTAACCAAAATGATGAACCTCTTATTTTAAGTGATGACATAAGTGAGAATGAGTTACCTGTTATATCAACTCCTTTACATCAAGCAGCACAATCGGGTGACTCTGAAAAGGTTATGGAACTCTTAGAACAGGGCTTAGATCCATGTGTCAAAGATGAAAGGGGACGGACGCCATATATGTTGGCACCTGACAAGGAAGTCAGGAACACTTTCAGAAGGTTTATGGCTTCAAATCTCGACAAGTGGGATTGGAATGCTGCAAAAGTGCCTAGTGCATTGACTAAAGAAATGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCTAAGAGAAAAGCTAGAGCAAAAGAATTAAAGAAATTACGTAAAGCAAAAGAAAAGAAGGCTCAGGCTGAAGCTGCTGAAAAACAAAAGATTGCTTCAACATCTGCTACAGGACAATCTCAATCAAAAAGTGGTGTGAAATTATCGAAAGCGGAGGAACTAAAAAGAGCACAGGATGCAGAAAGAGAAAAGAGAGCAGCTGCTGCAGAAAGAAGAATGGCTGCCCTCAAAATTCAAGCTAGTAATTCAACCACTTCAGCTAATAATAGTGGATTAGACGGTGACATATTATGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCTTTCCACCGGTATAATTACAAATACTGCAGCACTTCATGCATGCATGTACACAAAGAGATCCTAGAAGATGGATGA 1908 0.4161 MASSQEKRHRSIFELPSNYFDSCRLLPSPHSSLPDHHTQTLQPPSNDAVDDIQNAVVSGPRLTCNTCKAHFDSLQDQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEDLTSDFVKDYDVSSISGSESDDDDDSENESRSQNLVPNKSGISLKQKLFVSLQTGQRVSVWKSLIMNVSENVVYEDEQVQKNLVERLKSLTVEPSDKTRLRIVLLASGGHFAGCVFDGDTVVAHKTFHRYVVRAKAGKKQSAKDASGRTVHSAGASLRRYNELALKKEVHELLTAWRPYFDASICIFIHAPSSSRELLYDGEKPCFTNPQCVRNIAMIVRRPTLREAKRIYGQLTLVSYEADEKEILQSNQQDGVPIRKAKRNGAPTVSKVDIAGLDENDKAEVCSSNQNDEPLILSDDISENELPVISTPLHQAAQSGDSEKVMELLEQGLDPCVKDERGRTPYMLAPDKEVRNTFRRFMASNLDKWDWNAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLRKAKEKKAQAEAAEKQKIASTSATGQSQSKSGVKLSKAEELKRAQDAEREKRAAAAERRMAALKIQASNSTTSANNSGLDGDILCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHKEILEDG* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1882 635 Coils Coil 551 578 - -
Mtr7g1882 635 SUPERFAMILY Ankyrin repeat 416 468 IPR036770 -
Mtr7g1882 635 Pfam Bacteroidetes VLRF1 release factor 208 345 IPR041175 -
Mtr7g1882 635 ProSiteProfiles Ankyrin repeat profile. 416 445 IPR002110 GO:0005515
Mtr7g1882 635 Gene3D - 406 545 IPR036770 -
Mtr7g1882 635 Pfam Vms1-associating treble clef domain 599 630 IPR041540 -
Mtr7g1882 635 MobiDBLite consensus disorder prediction 529 548 - -
Mtr7g1882 635 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 631 - -
Mtr7g1882 635 MobiDBLite consensus disorder prediction 487 569 - -
Mtr7g1882 635 Coils Coil 489 528 - -
Mtr7g1882 635 MobiDBLite consensus disorder prediction 119 143 - -
Mtr7g1882 635 ProSitePatterns Zinc finger C2H2 type domain signature. 64 86 IPR013087 -
Mtr7g1882 635 MobiDBLite consensus disorder prediction 492 506 - -
Mtr7g1882 635 MobiDBLite consensus disorder prediction 549 569 - -
Mtr7g1882 635 ProSiteProfiles Ankyrin repeat region circular profile. 416 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1882 Mtr-Chr7 34905945 34912980 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1882 1 586 C2H2 Transcription Factor Family AT1G01930 52.570 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1882 K26089 - gmx:100527709 827.78