Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1840 ATGGCTGCAAATTCTGAGAATATATTGTCCTTGTCATTGCTTTCTACTTCAGAGGTTCTTGGTGGCGCTGATTCTCCCACGGTTGCAGTGTGTTCTCTTTGCCGCAAGGCCTTATCGCCTGATGATGAGATAACAGATCTTGCAGCCGGTGGTGTATGCGGTGATTGTAAATTTTTATTGCTCGAAGACTTTGGAAATCATACACTTGCACTAAGCTCTCATAGGAGGCTAAGAGGAAGATTGAGGCACGGTAGTTCTGAATCATTTGAGAACCTTGCATCTTTAGAGGAAGATCAACATGTAGATGGTGACAACACTACATGGTCATTACAGTATGCTAGTGCAAATACAACTCCTACTGGGTCTAGAAGCTGGAGGCATGTTCTCTCGGATACCGAAAGTGATGGTTTTGATAATTGGCGTTCTCTATATGGTGAAAATGAATCAAACTCAAGTTTTAGACCATATAGGGTTCCCCACAGTGAGACTGATTCCTTTTCTTTCAGTGCTTATGGTGGTGAGTCCGATATCTCTATGGATAGACAGAGTTTTGTAGGCAATGAAACTTTTAATTTACCAGATGAGGGAGATGAGTTTGATAGTGACACCGACATCGATCCAATGCATGCTGGCCTTGGTCAGTGGAACTCGGATGATACAGAAGAAGAGGAGGAAGAGGAATTACCTGAGGTTGACGAAGCTGAAGCCGCTCGCCTTCAAATTCTTTTAAACTCAAGTCCAAGTGAGAGCGAAAGTCGCATTAATTGGGAACAAAGGTTTAATGCTACTGAATCTGAGGGAATATTTAGCCGGATAATCAGGGAAACTTGGTTAGCATTGGACGACGCTGATTTACCTCAAGGAGCTAACTTTGGAGATTTCCTTGATACCAGACGCTTCAATGATCTTCTTGACCATCTCGCTGAAAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGCGTCGTTTGTAAACAATCTACCTCGTGTATTCATTAGCAAGGAACACAAGAAGCATGACGAACTAGTTTGTGCCATCTGCAAGGATGTTTTAGCCCTCGGCACTGAAGTAAATCAGCTCCCTTGTTCTCACCTTTACCATTCTCATTGCATTTTACCGTGGTTGAAGACACGTAATTCATGCCCTCTTTGTCGTTACGAGCTTCCAACCGATGATAAGGATTACGAAGAGGGAAAACAGAACGTTGATGGTAGAAATGTGATCTATGATATGCAACAATTACATGTTATGGATGATAGTTTCTCTGATGTTTCTGATGGAGAAGAAGCGGTTGAAGACGATGGTACCACTACTCATGATACCGTGAATTCTTCTGCAGCAAGTGGTGGTAGCGGAAGATGGTTGTTTCTTGCTGCAGCTCCAATTGTTAGTTTAGTAGGCATGGTTATTGTACTGTGGTTAGGTAGTAACTCTCAGATTGAAGAGACTAGACATTCGAGTACTCGCTATTTGTCTGTGCAAAATCAGCACCCTGTTCATGTTTCTGGTTCTCAAAACCAAAGGGAGAGTAGAAGCAGAAGATGGTGGTGTCCATTCTAA 1563 0.4306 MAANSENILSLSLLSTSEVLGGADSPTVAVCSLCRKALSPDDEITDLAAGGVCGDCKFLLLEDFGNHTLALSSHRRLRGRLRHGSSESFENLASLEEDQHVDGDNTTWSLQYASANTTPTGSRSWRHVLSDTESDGFDNWRSLYGENESNSSFRPYRVPHSETDSFSFSAYGGESDISMDRQSFVGNETFNLPDEGDEFDSDTDIDPMHAGLGQWNSDDTEEEEEEELPEVDEAEAARLQILLNSSPSESESRINWEQRFNATESEGIFSRIIRETWLALDDADLPQGANFGDFLDTRRFNDLLDHLAENDSSRRGAPPAAASFVNNLPRVFISKEHKKHDELVCAICKDVLALGTEVNQLPCSHLYHSHCILPWLKTRNSCPLCRYELPTDDKDYEEGKQNVDGRNVIYDMQQLHVMDDSFSDVSDGEEAVEDDGTTTHDTVNSSAASGGSGRWLFLAAAPIVSLVGMVIVLWLGSNSQIEETRHSSTRYLSVQNQHPVHVSGSQNQRESRSRRWWCPF* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1840 520 MobiDBLite consensus disorder prediction 191 233 - -
Mtr7g1840 520 MobiDBLite consensus disorder prediction 426 450 - -
Mtr7g1840 520 SUPERFAMILY RING/U-box 327 392 - -
Mtr7g1840 520 MobiDBLite consensus disorder prediction 217 232 - -
Mtr7g1840 520 MobiDBLite consensus disorder prediction 495 515 - -
Mtr7g1840 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 392 IPR013083 -
Mtr7g1840 520 MobiDBLite consensus disorder prediction 495 513 - -
Mtr7g1840 520 Pfam Ring finger domain 345 386 IPR001841 -
Mtr7g1840 520 PANTHER OS06G0101300 PROTEIN 286 430 - -
Mtr7g1840 520 SMART ring_2 345 385 IPR001841 -
Mtr7g1840 520 CDD RING-H2_RNF126_like 345 386 - -
Mtr7g1840 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 286 430 - -
Mtr7g1840 520 ProSiteProfiles Zinc finger RING-type profile. 345 386 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1840 Mtr-Chr7 34391195 34394262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1840 29 520 C3H Transcription Factor Family AT5G01980 43.870 1.75e-114 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1840 - - mtr:MTR_7g074170 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1840 7 34391195 34394262 Mtr7g1840 7 34391195 34394262 ECH