Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1838 ATGGAAGGGAACGGAGCATCATCTTCATCATCGAGAAGATATGGATTCCCGTCGGCTGCAAGCATAATTCAAGCACCGTTATCAGCGCTGTTGGAATATTCCGGTATTCTTCCGGCGAGGTCAAACCAGCAACATCAACCAATTCCCGATTCTGCCCCTAACGATGGTGAGGTTTCAATTAGGATCATTGGGTCTAACGAGCAAGATAATCATCGAGATGAACAGGGTAGTCCACTGGTGGTGAATGATGGTGGTGGTGCGGCTGCGATGACGAATTCCTCAGAACATGGCGATGTCGAGGGCGTTTTGAGGACGGGGAGTGGGAATGTTGATGCAGAATCAGGTGGTGGTGGTGGTGGTGGTGACGTTGGTGCTAATGGGAGAGATTCTTCTTATCAAAGATACGATATTCAACATGCTGCTAGGTGGATTGAACAAGTCTTGCCGTTTTCTTTGCTTCTTTTGGTGGTTTTCATTCGCCAACATTTGCAAGGGTTTTTTGTTACCATTTGGATTGCTGCTGTGCTTTTTAAGTCAAATGACATTCTGCGGAAACAAACGGCTTTGAAGGGAGAGAGGAAAATGCCAGTTTTGATTGGAATTTCGGTTGCGTTTACACTTCATGTGGTTAGTGTTTATTGGTGGTATCAGAATGATGATCTAATGTATCCGTTAGTCATGCTTCCTCCCAAGGAGATACCGCCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGATACTTTGGCGCGCCAGGCTGCAATGGTAGTCAAGTGTATATTGTTAATGTATTATAAGAACAGCAGAGGCCGCAATTATCGTAAGCAGGGGCAAATGCTGACTTTAGTCGAATACCTTCTCTTACTTTACCGAGCCTTGTTGCCAGCACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAGCTCACATCTGTCGTTGAAAAGGTGCAATCCTTCTTTGCTGCGGTGAAAGCATTGTCACGTAAAGAAGTGCACTATGGTGCTCATGCAACATCAGAGCAGGTCATTGCAGCCGGTGATCTTTGTGCCATTTGTCAAGAGAAGATGCATGCCCCAATCTTACTTCGTTGTAAACACATTTTCTGTGAAGACTGTGTATCAGAATGGTTTGAGAGGGAAAGGACATGCCCATTGTGCAGGGCTTTGGTAAAACCTGCAGACCTCAGGTCATTTGGTGATGGCTCTACTAGTTTATTTTTCCAGTTATTCTGA 1281 0.445 MEGNGASSSSSRRYGFPSAASIIQAPLSALLEYSGILPARSNQQHQPIPDSAPNDGEVSIRIIGSNEQDNHRDEQGSPLVVNDGGGAAAMTNSSEHGDVEGVLRTGSGNVDAESGGGGGGGDVGANGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKMPVLIGISVAFTLHVVSVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMVNDTLARQAAMVVKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPAPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAHATSEQVIAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1838 426 ProSitePatterns Zinc finger RING-type signature. 380 389 IPR017907 -
Mtr7g1838 426 SUPERFAMILY RING/U-box 356 408 - -
Mtr7g1838 426 ProSiteProfiles Zinc finger RING-type profile. 365 403 IPR001841 -
Mtr7g1838 426 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 5 426 IPR044235 GO:0061630|GO:1904294
Mtr7g1838 426 CDD RING-HC_RNFT1_like 364 403 - -
Mtr7g1838 426 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 426 - -
Mtr7g1838 426 MobiDBLite consensus disorder prediction 66 127 - -
Mtr7g1838 426 Pfam Zinc finger, C3HC4 type (RING finger) 363 406 - -
Mtr7g1838 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 413 IPR013083 -
Mtr7g1838 426 SMART ring_2 365 402 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1838 Mtr-Chr7 34376326 34381459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1838 1 426 C3H Transcription Factor Family AT5G01960 70.575 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1838 - K22379 gmx:100818546 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1838 7 34376326 34381459 Mtr7g1838 7 34376326 34381459 ECH